Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_B06
(1309 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 37 0.005
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.087
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.15
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 3.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 3.3
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 37.1 bits (82), Expect = 0.005
Identities = 31/134 (23%), Positives = 34/134 (25%), Gaps = 3/134 (2%)
Frame = -1
Query: 631 PPPXLXXPPPPPPPXXXIXXXXXXPXXXSLXXXLXXXPSXXXXXXSXXXXXXXXFPXLXX 452
PP PPPPPP P S P S
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 451 PXPFFPXPPYPXPXXXXLPPXX---LXTXSPXLPXXPPPSPXXXXXPXPLXXXLXXXPLX 281
P P P LPP L +P P PP +P P + P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAA 473
Query: 280 SXXXPXPXPPPXXP 239
P P P P P
Sbjct: 474 PAPPPAPAPAPAAP 487
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = -1
Query: 862 PXSLPXXXFPXLPPX-------TXPXPSPFSXPPXLXSSLPXSXXXPFP 737
P ++P P LPP T P P+P S PP SLP S P
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/66 (28%), Positives = 21/66 (31%)
Frame = -1
Query: 436 PXPPYPXPXXXXLPPXXLXTXSPXLPXXPPPSPXXXXXPXPLXXXLXXXPLXSXXXPXPX 257
P PP P PP + + LP PPP PL P P P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL-------PPQGRSAPPPP 364
Query: 256 PPPXXP 239
PP P
Sbjct: 365 PPRSAP 370
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/70 (27%), Positives = 23/70 (32%)
Frame = -1
Query: 931 PSLXXXXPXSXXXXPPXXPXXLLPXSLPXXXFPXLPPXTXPXPSPFSXPPXLXSSLPXSX 752
PSL P S PP P L + P P P P+ P L + P
Sbjct: 421 PSLPPSAPPSL---PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 751 XXPFPXXXSP 722
P P +P
Sbjct: 478 PAPAPAPAAP 487
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = -3
Query: 365 PPPXXSTLPXXXXXPXXPXXXXXXXP-PPFXLXXXPXPSXXXXXPPPPFSXXFPXSXPXP 189
PP +LP P P P PP P P+ PP P + P P P
Sbjct: 424 PPSAPPSLPPSAP-PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Query: 188 XP 183
P
Sbjct: 483 AP 484
Score = 26.2 bits (55), Expect = 10.0
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Frame = -1
Query: 934 SPSLXXXXPXSXXXXPPXXPXXLLPXSLPXXXFPXLPPXTXP-XPSPFSXPPXLXSSLPX 758
+P+L S PP LP S P P LPP P P P L S P
Sbjct: 400 APALPPLGNASRTSTPPVPTPPSLPPSAP----PSLPPSAPPSLPMGAPAAPPLPPSAPI 455
Query: 757 SXXXPFPXXXSP 722
+ P +P
Sbjct: 456 APPLPAGMPAAP 467
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.087
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = -3
Query: 371 TPPPPXXSTLPXXXXXPXXPXXXXXXXPPPFXLXXXPXPSXXXXXPPPPFSXXFPXSXPX 192
TPP S P P P PPP P P+ PPPP S P
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPP---SAPPMPAGPPSAPPPPLPASSAPSVPN 1745
Query: 191 P 189
P
Sbjct: 1746 P 1746
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/68 (27%), Positives = 23/68 (33%)
Frame = -1
Query: 910 PXSXXXXPPXXPXXLLPXSLPXXXFPXLPPXTXPXPSPFSXPPXLXSSLPXSXXXPFPXX 731
P PP P P P P PP P P S PP + + P + P P
Sbjct: 1683 PAHPVSTPPVRPQSAAP---PQMSAPTPPPPPMSVPPPPSAPP-MPAGPPSAPPPPLPAS 1738
Query: 730 XSPXXXXP 707
+P P
Sbjct: 1739 SAPSVPNP 1746
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.15
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Frame = -1
Query: 451 PXPFFPXPPYPXPXXXXLPPXXLXTXSPXLPXXP---PPSPXXXXXPXPLXXXLXXXPLX 281
P P PP P P +PP + +P +P PP P P + P+
Sbjct: 1095 PKPSVAAPPVPKPSVA-VPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Query: 280 SXXXPXPXPPPXXPXXPLP 224
+ P P P P+P
Sbjct: 1154 APSGAPPVPKPSVAAPPVP 1172
Score = 31.9 bits (69), Expect = 0.20
Identities = 23/85 (27%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Frame = -1
Query: 451 PXPFFPXPPYPXPXXXXLPPXXLXTXSPXLP---------XXPPPSPXXXXXPXPLXXXL 299
P P PP P P PP + T +P +P P P+P P
Sbjct: 1025 PLPSADAPPIPVPSTA--PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082
Query: 298 XXXPLXSXXXPXPXPPPXXPXXPLP 224
P S P P P P P P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKP 1107
Score = 30.3 bits (65), Expect = 0.61
Identities = 22/81 (27%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Frame = -1
Query: 451 PXPFFPXPPYPXPXXXXLPPXXLXTXSPXLPXX-----PPPSPXXXXXPXPLXXXLXXXP 287
P P PP P P P +P +P P P P P P P
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKP-SVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Query: 286 LXSXXXPXPXPPPXXPXXPLP 224
S P PP P P P
Sbjct: 1202 KPSVGVPPVPPPSTAPPVPTP 1222
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.9
Identities = 22/77 (28%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Frame = -1
Query: 931 PSLXXXXPXSXXXXPPXXPXXLLPXSLPXXXFPXLPPXTXPXPSPFSXPPXLXSSLPXSX 752
P L S PP P P S P + P PSP S PP + P
Sbjct: 110 PKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPS 169
Query: 751 XXPFP-XXXSPXXXXPS 704
P P +P PS
Sbjct: 170 SLPPPAQPAAPVKSPPS 186
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = -1
Query: 397 PPXXLXTXSPXLPXXPPPS-PXXXXXPXPLXXXLXXXPLXSXXXPXPXPPPXXPXXPL 227
PP +P PP S P P P P + P PPP P P+
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV 181
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 631 PPPXLXXPPPPPPP 590
P P + PPPPPPP
Sbjct: 754 PAPIMGGPPPPPPP 767
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Frame = -3
Query: 371 TPPPPXXSTL---PXXXXXPXXPXXXXXXXPPPFXLXXXPXPSXXXXXPPPP 225
+PPPP + + P P P PPP P P PPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP----PPPPPGVAGAGPPPP 778
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/34 (32%), Positives = 13/34 (38%)
Frame = -3
Query: 290 PPPFXLXXXPXPSXXXXXPPPPFSXXFPXSXPXP 189
PPP + P P+ PP P P P P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Frame = -1
Query: 631 PPPXLX--XPPPPPPP 590
PPP + PPPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPP 781
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = -1
Query: 451 PXPFFPXPPYPXPXXXXLPPXXLXTXSPXLPXXPPPSP 338
P P PP P PP P PPP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 21.8 bits (44), Expect(2) = 4.0
Identities = 8/21 (38%), Positives = 9/21 (42%)
Frame = -1
Query: 619 LXXPPPPPPPXXXIXXXXXXP 557
L PPPPPP + P
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAP 748
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 3.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 644 LSXLPPSXPXPXPPPP 597
++ LPP P P PPPP
Sbjct: 1 MASLPPGNPPPPPPPP 16
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +2
Query: 704 GGXXXXRGXGXRKRXXXXXXXGGGEXGGXGEGXXXRGGXGG 826
GG RG R GG GG G RGG GG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.155 0.502
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,132
Number of Sequences: 5004
Number of extensions: 25927
Number of successful extensions: 246
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 715384080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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