Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B05
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    28   1.6  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   2.8  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    26   6.4  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   6.4  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   8.5  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   8.5  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 328 AIDLLTNDECRLLLEVEDFFN 390
           +I+ +TND+ R++ E+E F+N
Sbjct: 358 SINFVTNDDVRMMREIEQFYN 378


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 461 STRHHRRS*NQVPPNSLTIFCSS*TVNANK 550
           STR   +  N+VP N L I+C    +  NK
Sbjct: 74  STRERLKLYNKVPDNGLVIYCGEVIMEGNK 103


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 169 ILCVKAHAGVQTIRY*KPIVIAKLHEKTKIRLLTAS 62
           ++  +A  G+ T+ Y  P+ +A LH+   +  LTA+
Sbjct: 422 VVTAQATLGIMTLIYVVPVPLAALHQAGSLVTLTAA 457


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +3

Query: 90  FSCNFAITMGF*YLIVCTPACAFTHN-IKMLAKMAPS-QDKLVHLHKTPTSLDINPSGLL 263
           F C   I++ F   I    A A  H  I  L  + P  +D   H  K      I+P  LL
Sbjct: 310 FVCPSCISLDFDLQI---QAFARQHRVISTLGVVYPEREDSCFHKIKAAQWHQISPRSLL 366

Query: 264 FAFVELNHYNNECESEGVMGCGHRF 338
           F F E NH +++     ++  G ++
Sbjct: 367 FQFQEQNHIHHKKIRRKLLAAGWKW 391


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 571 LEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPT-EELLREFETV 723
           +E + D+ S   N S +P+      P  V+ SSP   + P+  +++ + +T+
Sbjct: 470 IEPEPDVISTVRNSSTIPQASSSSVPKIVVDSSPVTENPPSHSDVMGQKDTI 521


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 745 ALTRQHHKPFRIPAAVLQWAARSQKDLK-LEPLPGVVGPRVQELQK 611
           A T   H P + P+  +QW  +S +DL+ ++    V+    +E  K
Sbjct: 746 AFTHLGHHPDKTPSEYIQWRFQSGEDLEAMDKASRVISEADEEAMK 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,114
Number of Sequences: 5004
Number of extensions: 61444
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)