Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_B04
(922 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein. 31 1.2
AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical ... 31 1.2
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 31 1.5
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 30 2.0
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 29 4.7
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 29 6.2
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 29 6.2
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 28 8.2
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 8.2
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 8.2
>AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein.
Length = 139
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = -2
Query: 921 GPGCPXXGXGSGPGGXPHXGXXXGGNGXGXPP*GRXGXRPXXAGXLDFWRLXXGGG 754
GPG G G GPG G GG G GR G G + GGG
Sbjct: 62 GPGLGGPGVGGGPGAFGPYGRYGGGGYGGYGRYGRYGRYGGYGGYGGYGGPGYGGG 117
>AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical
protein F46E10.2 protein.
Length = 139
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = -2
Query: 921 GPGCPXXGXGSGPGGXPHXGXXXGGNGXGXPP*GRXGXRPXXAGXLDFWRLXXGGG 754
GPG G G GPG G GG G GR G G + GGG
Sbjct: 62 GPGLGGPGVGGGPGAFGPYGRYGGGGYGGYGRYGRYGRYGGYGGYGGYGGPGYGGG 117
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -2
Query: 918 PGCPXXGXGSGPGGXPHXGXXXGGNGXGXPP*GRXGXRPXXAG 790
PG P G G GP G P G G P G G RP +G
Sbjct: 157 PGAPAHGGGQGPPGPPGPAGDAGSPGQAGAP-GNPG-RPGQSG 197
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -2
Query: 918 PGCPXXGXGSGPGGXPHXGXXXGGNGXGXPP 826
PGCP GP G P GGNG PP
Sbjct: 140 PGCPGP---KGPSGLPGSAGPAGGNGRRGPP 167
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 921 GPGCPXXGXGSGPGGXPHXGXXXGGNGXG 835
G GC G G G GG G GG G G
Sbjct: 87 GGGCGGGGCGGGGGGCGGGGGCGGGGGGG 115
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/43 (44%), Positives = 20/43 (46%)
Frame = -2
Query: 918 PGCPXXGXGSGPGGXPHXGXXXGGNGXGXPP*GRXGXRPXXAG 790
PG P G GSG G P G G G P GR G +P AG
Sbjct: 178 PGAPGVGGGSGAPGAP--GPKGAPGGPGQP--GRDG-QPGQAG 215
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 918 PGCPXXGXGSGPGGXPHXGXXXGGNGXGXPP 826
PG P +GP G P G G NG PP
Sbjct: 249 PGPPGPPGMAGPDGIPGMGGAKGQNGPDGPP 279
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -2
Query: 918 PGCPXXGXGSGPGGXPHXGXXXGGNGXGXPP 826
PG P G G GP G P G G P
Sbjct: 159 PGAPAQGGGQGPPGPPGPAGSAGSPGQAGAP 189
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -2
Query: 918 PGCPXXGXGSGPGGXPHXGXXXGGNGXGXPP 826
PG P G G GP G P G G P
Sbjct: 159 PGAPAQGGGQGPPGPPGPAGSAGSPGQAGAP 189
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -2
Query: 915 GCPXXGXGSGPGGXPHXGXXXGGNGXGXPP*GRXG 811
G P G GP G G G G G PP G+ G
Sbjct: 173 GPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGG 207
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -2
Query: 915 GCPXXGXGSGPGGXPHXGXXXGGNGXGXPP*GRXG 811
G P G GP G G G G G PP G+ G
Sbjct: 453 GPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGG 487
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,315,975
Number of Sequences: 27780
Number of extensions: 158278
Number of successful extensions: 743
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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