Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B03
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...   155   8e-39
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    29   0.87 
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.5  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   3.5  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.1  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   6.1  

>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score =  155 bits (376), Expect = 8e-39
 Identities = 70/168 (41%), Positives = 106/168 (63%), Gaps = 5/168 (2%)
 Frame = +2

Query: 239 YLRYLSISHQKDLQTLLQKKCPHKLDVGAAYNTKP----SVGRHDAVVISRELVFDIDLT 406
           Y+RYLS S+ ++L+      CP + +VG  Y+  P    ++ +     + +ELVFDID+T
Sbjct: 76  YIRYLSFSNWEELKKEALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMT 135

Query: 407 DYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYE 586
           DYD++RTCC +  +CEKCW F+ IA +++D    +DFGF+ ILWV+SGRRGIH W+ D  
Sbjct: 136 DYDDVRTCCSKTNICEKCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEI 195

Query: 587 ARTLDSPGRGAIADYLCLIVGG-ENQSKKVHLGNENLHSSIRRALNII 727
           A +LD   R  IA YL ++VG  +   + ++     LH  + R+LNI+
Sbjct: 196 ACSLDDRSRRMIASYLQVVVGNPQGGVRLINNLKRPLHPHLTRSLNIL 243


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 446 VCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSG 550
           +C  C K   I   ++   L +  GF ++LW+F G
Sbjct: 497 ICAACGKAGAILSALLFNKLTEVIGFGNVLWIFFG 531


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 735 YLSIIFKARLILECKF--SLPRCTFLLWFSP 649
           Y SI   + +   C +  ++P C  LLWF P
Sbjct: 335 YFSIYKMSDMAASCTYMAAMPACVILLWFEP 365


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -2

Query: 523 EPEVIF*SFINDFTCNNHKFPAFFTH 446
           +P+V + + ++DF+C+ + FP   +H
Sbjct: 563 DPKVEYKAILHDFSCHTYDFPESLSH 588


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 803 INFKNEFSLSVAKIPDLVIIVQSICLLY 720
           +NF N FS  + +IP L ++ Q +C ++
Sbjct: 134 LNFINAFSWGMIEIPLLFLLRQELCAIH 161


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 488 IIDKALKDDFGFQSIL-WVFSGRRGIHCWVSDYEARTLDSPGRGAIADY 631
           I+DK ++  FGF S+L   FS  R        +EA   DS G G +A Y
Sbjct: 399 ILDKPVESVFGFISVLPGAFSAYR--------FEALQNDSQGNGPLASY 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,546,164
Number of Sequences: 5004
Number of extensions: 74213
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)