Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B03
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722...    43   4e-04
11_04_0339 - 16527602-16527742,16528622-16528800,16529617-165296...    29   4.9  

>05_03_0678 -
           16871481-16871620,16871836-16871881,16872170-16872243,
           16872495-16872552,16872640-16872702,16872891-16873012,
           16873132-16873247,16873367-16873428,16873497-16873589,
           16874061-16874138,16874248-16874423,16874500-16874550,
           16874964-16875078
          Length = 397

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
 Frame = +2

Query: 236 VYLRYLSISHQKDLQTLLQKKCPHKLDVGAAYNTKPS-------VGRHDAVVISRELVFD 394
           +Y+R+ S     +++  +++KCP K+D+G  Y+  P+        G +  V + REL+FD
Sbjct: 80  IYVRFQSFDSVAEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAQSGNNVFVPVERELIFD 139

Query: 395 I 397
           I
Sbjct: 140 I 140



 Score = 32.7 bits (71), Expect = 0.40
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 596 LDSPGRGAIADYLCLI-VGGENQSKKVHLGNENLHSSIRRA 715
           L++  R AIADY  +  VGGEN  KKV L    LH  + R+
Sbjct: 154 LNNEQRAAIADYFRVYKVGGENTMKKVSLTGAVLHPFLARS 194



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
 Frame = +1

Query: 109 SDMLPTYYARQFPQNIFCRWLACGS-SPQPLCN------RELSFTL 225
           +D L  YY + FP   F +WL+ G+    P C+      RE SFTL
Sbjct: 31  ADYLRIYYGKLFPHVDFFKWLSYGNDGKHPGCDQSYVGRREFSFTL 76


>11_04_0339 -
           16527602-16527742,16528622-16528800,16529617-16529680,
           16530357-16530475,16530560-16530686,16530937-16531149,
           16531462-16531500
          Length = 293

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 561 IPRRPENTHRMLWNPKSSFKALSMISHAITINFQHFSHT 445
           I +R +   R++W  K    ALS ISHA  IN   F+ T
Sbjct: 71  ISKRKDEYVRIMW--KQEINALSSISHANVINLVGFADT 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,592,809
Number of Sequences: 37544
Number of extensions: 435149
Number of successful extensions: 926
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)