Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_B03
(878 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071217-1|AAL48839.1| 438|Drosophila melanogaster RE26079p pro... 177 2e-44
AE014296-1426|AAF50439.1| 438|Drosophila melanogaster CG7108-PA... 177 2e-44
X79801-1|CAA56196.1| 438|Drosophila melanogaster DNA polymerase... 174 1e-43
AE014297-4250|AAF56803.1| 2119|Drosophila melanogaster CG10011-P... 31 2.1
AY069771-1|AAL39916.1| 2119|Drosophila melanogaster SD01389p pro... 29 8.5
>AY071217-1|AAL48839.1| 438|Drosophila melanogaster RE26079p
protein.
Length = 438
Score = 177 bits (431), Expect = 2e-44
Identities = 82/171 (47%), Positives = 114/171 (66%), Gaps = 6/171 (3%)
Frame = +2
Query: 236 VYLRYLSISHQKDLQTLLQKKCPHKLDVGAAYNTKPSVGRH---DAVVISRELVFDIDLT 406
+Y+RYL Q +L+ + + P K+D+G ++KP R + RELVFDID+T
Sbjct: 72 IYIRYLCFDTQAELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMT 131
Query: 407 DYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYE 586
DYDE+RTCC A VC KCWKFMV+A ++D AL++DFGF+ I+W+FSGRRGIHCWV DY+
Sbjct: 132 DYDEVRTCCSGAGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQ 191
Query: 587 ARTLDSPGRGAIADYLCLIVGGE---NQSKKVHLGNENLHSSIRRALNIID 730
AR LD GR A+A+YL +I S + +G + H S++RAL I++
Sbjct: 192 ARHLDGRGRYAVAEYLNIITYASFAGGNSPRCSMG-DRPHHSLKRALKIVE 241
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 91 HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTL 225
+N +L DMLP YY R FP F RWL+ GSS + NRE+SFTL
Sbjct: 23 YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTL 68
>AE014296-1426|AAF50439.1| 438|Drosophila melanogaster CG7108-PA
protein.
Length = 438
Score = 177 bits (431), Expect = 2e-44
Identities = 82/171 (47%), Positives = 114/171 (66%), Gaps = 6/171 (3%)
Frame = +2
Query: 236 VYLRYLSISHQKDLQTLLQKKCPHKLDVGAAYNTKPSVGRH---DAVVISRELVFDIDLT 406
+Y+RYL Q +L+ + + P K+D+G ++KP R + RELVFDID+T
Sbjct: 72 IYIRYLCFDTQAELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMT 131
Query: 407 DYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYE 586
DYDE+RTCC A VC KCWKFMV+A ++D AL++DFGF+ I+W+FSGRRGIHCWV DY+
Sbjct: 132 DYDEVRTCCSGAGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQ 191
Query: 587 ARTLDSPGRGAIADYLCLIVGGE---NQSKKVHLGNENLHSSIRRALNIID 730
AR LD GR A+A+YL +I S + +G + H S++RAL I++
Sbjct: 192 ARHLDGRGRYAVAEYLNIITYASFAGGNSPRCSMG-DRPHHSLKRALKIVE 241
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 91 HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTL 225
+N +L DMLP YY R FP F RWL+ GSS + NRE+SFTL
Sbjct: 23 YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTL 68
>X79801-1|CAA56196.1| 438|Drosophila melanogaster DNA polymerase
subunit A protein.
Length = 438
Score = 174 bits (424), Expect = 1e-43
Identities = 83/171 (48%), Positives = 112/171 (65%), Gaps = 6/171 (3%)
Frame = +2
Query: 236 VYLRYLSISHQKDLQTLLQKKCPHKLDVGAAYNTKPSVGRH---DAVVISRELVFDIDLT 406
+Y+RYL Q +L+ + + P K+D+G ++KP R + RELVFDID+T
Sbjct: 72 IYIRYLCFDTQAELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMT 131
Query: 407 DYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYE 586
DYDE+RTCC A VC KCWKFMV+A ++D AL +DFGF+ I+W+FSGRRGIHCWV DY+
Sbjct: 132 DYDEVRTCCSGAGVCLKCWKFMVLAARVLDVALAEDFGFEHIIWIFSGRRGIHCWVCDYQ 191
Query: 587 ARTLDSPGRGAIADYLCLIVGGE---NQSKKVHLGNENLHSSIRRALNIID 730
AR LD GR A A+YL +I S + +G + H SI+RAL I++
Sbjct: 192 ARHLDGRGRYAEAEYLNIITYASFAGGNSPRCSMG-DRPHHSIKRALKIVE 241
Score = 52.8 bits (121), Expect = 6e-07
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 91 HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTL 225
+N +L DMLP YY R FP F RWL+ GSS + NRE+SFTL
Sbjct: 23 YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTL 68
>AE014297-4250|AAF56803.1| 2119|Drosophila melanogaster CG10011-PA
protein.
Length = 2119
Score = 31.1 bits (67), Expect = 2.1
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +2
Query: 515 FGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIA-DYLCLIVGGENQSKKVHLGNEN 691
F F+ + S R G V+D +A D+ G G +VGG S + G N
Sbjct: 107 FNFRDSNRLASARNGNPVQVTDLDADEDDAQGDGVDGCGSTSALVGGSKYSSQPSAGTAN 166
Query: 692 LHSSIRRALNII 727
H RR LN +
Sbjct: 167 QHLEDRRILNFL 178
>AY069771-1|AAL39916.1| 2119|Drosophila melanogaster SD01389p
protein.
Length = 2119
Score = 29.1 bits (62), Expect = 8.5
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 545 SGRRGIHCWVSDYEARTLDSPGRGAIA-DYLCLIVGGENQSKKVHLGNENLHSSIRRALN 721
S R G V+D +A D+ G G +VGG S + G N H RR LN
Sbjct: 117 SARNGNPVQVTDLDADEDDAQGDGVDGCASTSALVGGSKYSSQPSAGTANQHLEDRRILN 176
Query: 722 II 727
+
Sbjct: 177 FL 178
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,044,582
Number of Sequences: 53049
Number of extensions: 774360
Number of successful extensions: 1817
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1814
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4270708416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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