Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B02
         (948 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    34   0.034
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.72 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.72 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.1  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   6.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 23/75 (30%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
 Frame = -1

Query: 948 RAXRGGAAXXAGXASGGRXXXPGXPXGXXGRXSXGXARGXXXXXXXXXXXXXXXXGXLXX 769
           R   GG     G  SGG    PG   G  G    G   G                G    
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242

Query: 768 GGGG-GGXIXGXGGG 727
           G GG GG + G GGG
Sbjct: 243 GPGGFGGGLGGFGGG 257


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 22/69 (31%), Positives = 23/69 (33%)
 Frame = +2

Query: 728 PPPXPXMXPPPPPPXYKXPXXXXXXXXXXXXXXXXPRAXPXEXRPXLPXGXPGXXXRPPD 907
           P P P   PP  PP    P                P + P    P LP G P     PP 
Sbjct: 416 PVPTPPSLPPSAPPSLP-PSAPPSLPMGAPAAPPLPPSAPIA--PPLPAGMPAAPPLPP- 471

Query: 908 AXPAXXAAP 934
           A PA   AP
Sbjct: 472 AAPAPPPAP 480



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
 Frame = +2

Query: 752 PPPPPPXY-----KXPXXXXXXXXXXXXXXXXPRAXPXEXRPXLPXGXPGXXXRPPDAXP 916
           PPPPPP       K P                PR+      P  P G       PP + P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370

Query: 917 AXXAAPP 937
           +    PP
Sbjct: 371 STGRQPP 377



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 814 RGXPXXPPGXTSRXXPPXPXGXTGAXLXXPXRXPR 918
           R  P  PP   +R  PP   G + + L  P   PR
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 728 PPPXPXMXPPPPPP 769
           PPP P M  PPPPP
Sbjct: 752 PPPAPIMGGPPPPP 765



 Score = 29.1 bits (62), Expect = 0.96
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 452 PPXPGKGGXLXGXXPPPPPQXSXG 523
           PP PG  G      PPPPP  S G
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 719 AKXPPPXPXMXPPPPPPXYKXP 784
           A  PP  P   PPPPPP ++ P
Sbjct: 2   ASLPPGNPP--PPPPPPGFEPP 21



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
 Frame = +2

Query: 728 PPPX---PXMXPPPPPPXY 775
           PPP    P   PPPPPP Y
Sbjct: 14  PPPGFEPPSQPPPPPPPGY 32



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = +2

Query: 728 PPPXPXMXPP--PPPP 769
           PPP P   PP  PPPP
Sbjct: 12  PPPPPGFEPPSQPPPP 27


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = +2

Query: 719  AKXPPPXPXMXPPPP--PPXYKXP 784
            A  PPP P   PPPP  PP    P
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGP 1727


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +1

Query: 793 PPRXPPXRGXPXXPPGXTSRXXPPXPXGXTGAXLXXPXRXPRXXGRPPP 939
           PP  P  RG     PG         P G     L  P R       PPP
Sbjct: 84  PPMDPSMRGSLLSGPGVARPAGRGIPLGQAPVGLAGPVRGVGYTAPPPP 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,901
Number of Sequences: 5004
Number of extensions: 21937
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)