Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_B02
         (948 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.8  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   9.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 731 PPXPXMXPPPPPPXYKXP 784
           PP P   PPPPPP    P
Sbjct: 338 PPKPA--PPPPPPSSSGP 353


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 31  YSGILKIXIVGDLLVIWWHFIXLSVCSP*XLFLLNI 138
           YS +L + +VG+  VIW      S+ +P  +F++++
Sbjct: 64  YSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSL 99


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 31  YSGILKIXIVGDLLVIWWHFIXLSVCSP*XLFLLNI 138
           YS +L + +VG+  VIW      S+ +P  +F++++
Sbjct: 64  YSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSL 99


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 616 RVLGXFVPXXGGXPRXPXXGXEXPXPQ 536
           R +G +VP     PR    G   P PQ
Sbjct: 135 RPMGPWVPMQEQIPRFRHIGPSTPFPQ 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,169
Number of Sequences: 438
Number of extensions: 4083
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)