Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_A23
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 54 3e-08
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 51 2e-07
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 41 3e-04
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 40 3e-04
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 28 1.5
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.6
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 27 4.6
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 27 4.6
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 26 8.1
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 54.0 bits (124), Expect = 3e-08
Identities = 29/57 (50%), Positives = 33/57 (57%)
Frame = +2
Query: 557 VTACALLRDFEQLPAGDCTLVGERGTSLXXXXXXXXXXXXXCYRQADIYLLDDPLSA 727
+ AC LLRDFE L GD T VGE+G SL Y ++DIYLLDD LSA
Sbjct: 679 IRACCLLRDFEILADGDQTEVGEKGISLSGGQKARISLARAVYSRSDIYLLDDILSA 735
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 51.2 bits (117), Expect = 2e-07
Identities = 27/57 (47%), Positives = 31/57 (54%)
Frame = +2
Query: 557 VTACALLRDFEQLPAGDCTLVGERGTSLXXXXXXXXXXXXXCYRQADIYLLDDPLSA 727
+ AC L RDFE GD T VG++G SL Y QADIYLLDD LS+
Sbjct: 677 IHACCLKRDFEIFTEGDQTEVGQKGASLSGGQKSRISLARAIYSQADIYLLDDVLSS 733
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 40.7 bits (91), Expect = 3e-04
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +2
Query: 530 YPVEDVFNVVTACALLRDFEQLPAGDCTLVGERGTSLXXXXXXXXXXXXXCYRQADIYLL 709
Y E F ++ AC L D + GD T + G+SL Y A++Y+
Sbjct: 671 YDEERYFQIIKACCLDSDLNSMNDGDLTYIHSNGSSLSGGQKQRVSLARALYSNAEVYIF 730
Query: 710 DDPLSA 727
DD SA
Sbjct: 731 DDIFSA 736
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 530 YP-VEDVFN-VVTACALLRDFEQLPAGDCTLVGERGTSLXXXXXXXXXXXXXCYRQADIY 703
YP +E+ + V+ AC LL D + A D T +GE+G +L Y I
Sbjct: 702 YPYIEERYKKVIQACGLLTDLQSFVASDLTEIGEKGVTLSGGQKQRIALARAVYSPTSIV 761
Query: 704 LLDDPLSA 727
L+DD SA
Sbjct: 762 LMDDVFSA 769
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 274 FRISRYSGQFHLQLKVPAMNIPNISILNIYIFKGI*LRINWF 149
FRI+ + +++ KVP IP + +L +Y F+ L + WF
Sbjct: 269 FRIAMKDPKTYVKHKVPLTKIPWLLVLKMYGFRLFILCLIWF 310
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 152 PINTQLYSFKNVNVKNTNIRNVHSWYFE 235
P+N LY+ + NVK+ NI +V Y+E
Sbjct: 33 PLNQNLYNIETENVKDLNIEDVD--YYE 58
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 4.6
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = -2
Query: 729 PADNGSSRRYMSACL*QARXSPTRARCPPXRLVPRSPTSVQSPAGNCSKSRSRAHAVTTL 550
P +GSS + S A SPT + P +PTS +S A N S +S A +
Sbjct: 168 PFSDGSSSKSASLTASSAAASPTVSFSPASTSENLTPTSSKSLASNTSLVQSFNSASRSS 227
Query: 549 KTSSTGY 529
S Y
Sbjct: 228 SISGNQY 234
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 143 LFKPINTQLYSFKNVNVKNTNIRNVHSWYFEL*M--KLAGVSR 265
+F P N++LY+ K VN N + + + E+ + KL+G R
Sbjct: 333 IFSPDNSRLYALKEVNFINADQTTIQGYKNEIALLRKLSGNDR 375
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/63 (26%), Positives = 24/63 (38%)
Frame = +2
Query: 539 EDVFNVVTACALLRDFEQLPAGDCTLVGERGTSLXXXXXXXXXXXXXCYRQADIYLLDDP 718
E+++ A + Q P G + VGERG L + I LLD+
Sbjct: 688 EEIYAAAKAAQIHDRILQFPDGYNSRVGERGLKLSGGEKQRVAVARAILKDPSIILLDEA 747
Query: 719 LSA 727
SA
Sbjct: 748 TSA 750
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,053
Number of Sequences: 5004
Number of extensions: 53317
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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