Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_A23
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   8.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 542 DVFNVVTACALLRDFEQLPAGDCTL 616
           D+  V T C + R   Q+ +G+C L
Sbjct: 224 DLIIVQTGCTITRVIPQVCSGNCKL 248


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 630 PRSPTSVQSPAGNCSKS 580
           PRSP +  SPA  C+ +
Sbjct: 738 PRSPNASPSPAEQCAST 754


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 542 DVFNVVTACALLRDFEQLPAGDCTL 616
           D+  V T C + R   Q+ +G+C L
Sbjct: 224 DLIIVQTGCTITRVIPQVCSGNCKL 248


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 170 YSFKNVNVKNTNIRN 214
           Y+F N N++NT I N
Sbjct: 29  YNFPNDNIRNTLISN 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,586
Number of Sequences: 438
Number of extensions: 3955
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)