Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_A21
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    62   1e-10
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    54   2e-08
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    31   0.22 
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    29   1.2  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    27   4.8  
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    26   8.4  

>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 30/83 (36%), Positives = 48/83 (57%)
 Frame = +3

Query: 180 FIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGF 359
           F+++AIS + V VFSKS+CP+CK AK+   K   P K  EL++ ++G+ IQ  L + T  
Sbjct: 8   FVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQ 67

Query: 360 RTADKHTADGEWLPSSMDFSKAR 428
            T        +++  + D +K R
Sbjct: 68  STVPSIFFRNQFIGGNSDLNKLR 90


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 24/65 (36%), Positives = 40/65 (61%)
 Frame = +3

Query: 171 IQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQL 350
           ++ F+  A++ + VVVF+KSYCPYC   + V    K   +V +++  ++G+ IQ  L + 
Sbjct: 4   VESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKK 63

Query: 351 TGFRT 365
           TG RT
Sbjct: 64  TGQRT 68


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 189 EAISKDKVVVFSKSYCPYCKLAKDVFE---KVKQPIKVIELNERDDGNTIQDNLAQLTGF 359
           E   ++ V++FS+  CPY   AK +     ++  P  V+E+ + +    ++D L+ ++  
Sbjct: 61  EVFLENPVIIFSRPGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDI 120

Query: 360 RT 365
            T
Sbjct: 121 ST 122


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 312 DDGNTIQDNLAQLTGFRTADKHTADGEWLPSSMDFSKARG 431
           DD      + +Q+TGFRTA  ++ + +WL +SM ++ + G
Sbjct: 349 DDNTFTNQSWSQVTGFRTALLNSFEQDWL-ASMSWNLSPG 387


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 249 LAKDVFEKVKQPIK-VIELNERDDGNTIQDNLAQLTGFRTAD 371
           L K V +    PI+  +  N+   G+TI   LA +TG RT D
Sbjct: 381 LLKKVAQLADVPIQSFVVRNDSPCGSTIGPKLAAMTGMRTLD 422


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -1

Query: 535 TNTWDTMVSNKIMYCKFFFLNYWWTVCWVGSSLAQPRALLKSIDDGNHSPS 383
           T  WD ++     YC  +   Y       G S   P   LK+  DG +SP+
Sbjct: 178 TEIWDLLLETNTKYCSLYDRGY---TSLGGVSDTSPNPALKN-PDGTYSPA 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,978
Number of Sequences: 5004
Number of extensions: 50713
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)