Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_A21
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0458 + 25370542-25370597,25371591-25371679,25372687-253727... 65 6e-11
02_05_0126 + 26050093-26050247,26051654-26051727,26051819-260519... 63 3e-10
02_04_0627 + 24585712-24585845,24586415-24586503,24587039-245871... 56 3e-08
08_02_1625 + 28336168-28336409,28336491-28336564,28337162-283372... 40 0.003
01_04_0016 + 15106791-15107102 31 1.6
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197... 29 5.0
02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938 29 6.6
01_01_0997 + 7884974-7885043,7885689-7885975,7886056-7886311,788... 28 8.8
>04_04_0458 +
25370542-25370597,25371591-25371679,25372687-25372785,
25372960-25373054
Length = 112
Score = 65.3 bits (152), Expect = 6e-11
Identities = 33/88 (37%), Positives = 48/88 (54%)
Frame = +3
Query: 186 KEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRT 365
KE ++ VVV+SKSYCP+C K +FE++ K IEL+ DG+ +Q LA+ TG RT
Sbjct: 7 KETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRT 66
Query: 366 ADKHTADGEWLPSSMDFSKARG*AKLLP 449
+G+ + D KL+P
Sbjct: 67 VPNVFINGKHIGGCDDTLALNNEGKLVP 94
>02_05_0126 +
26050093-26050247,26051654-26051727,26051819-26051917,
26052003-26052070
Length = 131
Score = 63.3 bits (147), Expect = 3e-10
Identities = 30/88 (34%), Positives = 50/88 (56%)
Frame = +3
Query: 180 FIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGF 359
F++ AI +++ +FSK+YCPY AK +F +K+ ++EL+ R+DG IQ L L G
Sbjct: 33 FVQNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGR 92
Query: 360 RTADKHTADGEWLPSSMDFSKARG*AKL 443
T + +G+ + S D + A +L
Sbjct: 93 HTVPQVFVNGQHVGGSDDTANAHSNGQL 120
>02_04_0627 +
24585712-24585845,24586415-24586503,24587039-24587137,
24587326-24587405
Length = 133
Score = 56.4 bits (130), Expect = 3e-08
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = +3
Query: 186 KEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRT 365
KE ++ VVVFSK+YCP+C K + ++ K +EL+ DG+ +Q LA TG RT
Sbjct: 33 KEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRT 92
>08_02_1625 +
28336168-28336409,28336491-28336564,28337162-28337236,
28337433-28337459,28339261-28339634,28339746-28340492
Length = 512
Score = 39.9 bits (89), Expect = 0.003
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 171 IQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERD-DGNTIQDNLAQ 347
++ +K ++ + VV++SKS+C Y K +F+++ VIEL++ G +Q L +
Sbjct: 59 MEDSVKRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLER 118
Query: 348 LTGFRT 365
LTG T
Sbjct: 119 LTGQST 124
>01_04_0016 + 15106791-15107102
Length = 103
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 210 VVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTG 356
VV+FS S C C +F ++ V+EL+E G ++ LA+L G
Sbjct: 13 VVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLG 61
>10_08_0426 - 17817975-17818582,17819068-17819209,17819648-17819745,
17820070-17821897,17822331-17822738,17822891-17822943,
17823461-17823877,17824401-17824605
Length = 1252
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 183 IKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIK 290
I A KD +V+FS S+C +C+ + V +V + K
Sbjct: 917 ISSAWKKDVLVLFSNSWCGFCQRTELVVREVYRSFK 952
>02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938
Length = 463
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +3
Query: 111 YMGSQSGKITRSSKMAGSVDIQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKV 275
Y ++SG++ + +AGS + + ++E+ + + F + Y P K+ DV +KV
Sbjct: 343 YFAAKSGRMCAEAIVAGSANGTRMVEESDLRRYLAEFDRLYWPTYKVL-DVLQKV 396
>01_01_0997 +
7884974-7885043,7885689-7885975,7886056-7886311,
7886455-7886537,7886634-7886687,7887941-7888012,
7889093-7889155,7889274-7889324,7889432-7889513,
7889606-7889701,7889774-7889944,7890024-7890130,
7890229-7890326,7890798-7891048,7891235-7891398,
7891689-7891979,7892067-7892377,7892477-7892655,
7893231-7893301
Length = 918
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 216 VFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLT 353
VF KS PY +L K +F++VK + ++ +DD + DN+ L+
Sbjct: 303 VFLKSTLPYKEL-KSMFQEVKIDFRTLKTQFQDDIIKLGDNVQGLS 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,722,218
Number of Sequences: 37544
Number of extensions: 325651
Number of successful extensions: 743
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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