Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_A21
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024756-6|AAK29881.1|  105|Caenorhabditis elegans Glutaredoxin ...    63   3e-10
U40945-3|AAA81721.2|  146|Caenorhabditis elegans Hypothetical pr...    42   8e-04
AC006831-2|AAF39994.2|  119|Caenorhabditis elegans Hypothetical ...    40   0.002
AC006831-3|ABD63200.1|   96|Caenorhabditis elegans Hypothetical ...    29   6.0  

>AC024756-6|AAK29881.1|  105|Caenorhabditis elegans Glutaredoxin
           protein 10 protein.
          Length = 105

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
 Frame = +3

Query: 180 FIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVK---QPIKVIELNERDDGNTIQDNLAQL 350
           F+   +   KVVVFSKSYCPYC  A+   E V      ++ IE++ER D N IQD L  L
Sbjct: 5   FVDGLLQSSKVVVFSKSYCPYCHKARAALESVNVKPDALQWIEIDERKDCNEIQDYLGSL 64

Query: 351 TGFRTADKHTADGEWLPSSMD 413
           TG R+  +   +G++     D
Sbjct: 65  TGARSVPRVFINGKFFGGGDD 85


>U40945-3|AAA81721.2|  146|Caenorhabditis elegans Hypothetical
           protein F10D7.3 protein.
          Length = 146

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
 Frame = +3

Query: 168 DIQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVK-QPIKVIELNERDDGNTIQDNLA 344
           D++  I   +   KV+V+SK+YCP+ K  K +    +   +K++EL+  +    +Q+ L 
Sbjct: 32  DLEDKIVNDVMTHKVMVYSKTYCPWSKRLKAILANYEIDDMKIVELDRSNQTEEMQEILK 91

Query: 345 QLTGFRTADKHTADGEWLPSSMDFSKARG*AKLLPTQHTVHQ*FKKK 485
           + +G  T  +    G+++    +        +L P     H  F  +
Sbjct: 92  KYSGRTTVPQLFISGKFVGGHDETKAIEEKGELRPLLEKAHALFTNR 138


>AC006831-2|AAF39994.2|  119|Caenorhabditis elegans Hypothetical
           protein ZK121.1a protein.
          Length = 119

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +3

Query: 183 IKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELN 305
           ++E + KD VV+++K+ C +C  AKD+F  V+   K + L+
Sbjct: 13  VQEQVKKDPVVMYTKTSCTFCNRAKDLFSDVRVAYKEVNLD 53


>AC006831-3|ABD63200.1|   96|Caenorhabditis elegans Hypothetical
           protein ZK121.1b protein.
          Length = 96

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 216 VFSKSYCPYCKLAKDVFEKVKQPIKVIELN 305
           +++K+ C +C  AKD+F  V+   K + L+
Sbjct: 1   MYTKTSCTFCNRAKDLFSDVRVAYKEVNLD 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,555
Number of Sequences: 27780
Number of extensions: 290049
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)