Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_A17
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.13 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.53 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -2

Query: 739  PXXXXPPXGXPPFXXXPPRGXGPXGXPPPXXP 644
            P    PP   PP    PP   GP   PPP  P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 17/52 (32%), Positives = 19/52 (36%)
 Frame = -3

Query: 759  PXXVKXPRXXPXPXXVXPPFXGXPPGGXGLXXXXPPPXPXXVWPXXGXPGPK 604
            P  +  P   P P  V PP    PP   G     PPP P    P    PG +
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP-PSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -3

Query: 759 PXXVKXPRXXPXPXXVXPPFXGXPPGGXGLXXXXPPPXPXXV 634
           P     P   P P    PP    PPG  G     PPP P  V
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
 Frame = +3

Query: 603 FLGRGXXXGAIXXXGXXGGGXPXGPXPRGGXXKKG--GXPXGGXXXXGG 743
           F  RG   G     G   GG P GP   GG    G  G   GG    GG
Sbjct: 180 FHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGG 228



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 27/86 (31%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
 Frame = +2

Query: 629 GHTQXGXG--GGXXXXRPXPPGGXPXKGGXTXXGXGXXRGXXTXXGFXPXXPXXGXXXF- 799
           GH   G G  GG     P  PGG    GG    G G   G     G  P     G   F 
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGG--FGGEGHHHGGHGGFGGGPGGFEGGPGGFG 241

Query: 800 SXPGXXXETLGNXPFWEGGXFXXPPG 877
             PG     LG      GG    P G
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGGPGG 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,541,108
Number of Sequences: 5004
Number of extensions: 15795
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)