Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_A16
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    59   9e-10
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    30   0.37 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    29   0.65 
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    29   0.65 
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    29   1.1  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   3.5  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    27   3.5  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   8.0  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   8.0  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    26   8.0  

>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 33/110 (30%), Positives = 66/110 (60%), Gaps = 5/110 (4%)
 Frame = +3

Query: 159 NQKMGAVVKYVIAGLVRYWLIHTDFWHTLSNRVEIATPLNSWKRLIEGVYLYDQNINPYE 338
           N+K+  +    I+  ++++L +T     L  R+E++TP++ + R+ EG+YLY+  ++PY 
Sbjct: 4   NEKLKLLGLLSISFFLQWYLANTWIAEFLYRRIEVSTPVSGFLRVREGLYLYENGLDPYS 63

Query: 339 GDAFHESPIVLVIFH--YLLKHVPYSLPFIF---SAMDLLTAYLLYKTSR 473
           G  F++SP++L++ +   LL  +  +  F++   S M  L  YL+ K +R
Sbjct: 64  GGVFYQSPLLLILNYCCELLGGISVT-RFVYTSISTMGGLFVYLIAKQAR 112


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 156  LLINICYVKDVCGT*Y*LRYIYYFNRF-NSFSSQIT 52
            L+++ICY  ++C   Y L + Y+F+ F N F   +T
Sbjct: 1305 LILSICYTINICVKVYGLSFYYFFHSFWNMFDVVVT 1340


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +3

Query: 246 SNRVEIATPLNSWKRLIEGVYLYDQNINPYEGDAFHESPIVLVIFHYLLKHVPYS-LPFI 422
           S+ +   TP +  K LI    L    +  Y G+   E+   + I H  + H+ ++ +PF+
Sbjct: 724 SHFIASKTPTDIAKFLISTEGLDKAVLGEYLGEGNDEN---IAIMHSFVDHMSFNDIPFV 780

Query: 423 FSAMDLLTAYLLYKTSRGFVRIFLNCQEKYLSD 521
            +    L  + L   ++   R  L   EKY+ D
Sbjct: 781 NALRSFLQKFRLPGEAQKIDRFMLKFAEKYIDD 813


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 195 AGLVRYWLIHTDFWHTLSNRVEIATPL---NSWKRLIEGVYLYDQNINPYEGDAFHESPI 365
           AG++R   I T  + T  ++ E+   L   N W  LI   Y+   +++  +  +  E P 
Sbjct: 156 AGILR---ISTHEYTTTQSQPELPQDLRLKNPWPELIN--YVKSMDLDNMDSSSLSEIPY 210

Query: 366 VLVIFHYLLKHVP 404
           +++I H LLK  P
Sbjct: 211 IVLIIHVLLKVSP 223


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 432 MDLLTAYLLYKTSRGFVRIFLNCQEKYLSDVSQESKDMVMTESQLKETSEYVLSV 596
           +D  T Y  Y  + GF +   NC   Y S  + +++D+V  ++      +Y+ +V
Sbjct: 156 LDASTIYQTYPVADGFCK--WNCWPYYTSSPTSDAEDLVYIQNSKATNKKYMATV 208


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 240 TLSNRVEIATPL---NSWKRLIEGVYLYDQNINPYEGDAFHESPIVLVIFHYLLKHVPYS 410
           ++S R+ I   L   + WK    G  +++  I+P+E ++F   P V V+F   +K  P+ 
Sbjct: 134 SMSPRISIEEKLEIFSKWKYESPGNNVFEA-ISPHERESFPSEPQVSVLFTSSVKRSPHG 192

Query: 411 L 413
           +
Sbjct: 193 V 193


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +3

Query: 411 LPFIFSAMDLLTAYLLYKTSRGFVRIFLNCQEKYLSDVSQESKDMVMTESQLKETSEYVL 590
           LP     MDL+  Y L    R  V IFL  ++K ++ VS E     +    L    + ++
Sbjct: 349 LPEALRLMDLIAIYGLEMFVRLLVAIFLKDRDKIVNMVSHEQWVKYLRSDVLASYRQPLV 408

Query: 591 SVYLF 605
             Y F
Sbjct: 409 QKYTF 413


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 418 LYSVQWTSSLRIFSTKPREVLSESSLT 498
           LYS+     +R+F  K  E+L+E S++
Sbjct: 501 LYSLHENGMVRVFDVKSEELLAEKSIS 527


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 708 LSHIHEPHHKVLQLT 664
           +SH+H  HH +L+LT
Sbjct: 240 VSHVHHDHHSMLRLT 254


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +1

Query: 394 NMSRIAYHLYSVQWTSSLRIFSTKPREVLSESSLTVKRNIYQMCLRNQRIWL*QKVS*KR 573
           N S +   LYS   T S+ + ++  R   S+ + T K   Y+M  RN      QK S  R
Sbjct: 353 NRSALVNQLYSPNATFSISLNASNVRTNFSQKTDTKKWGAYKMKSRNLLYSQSQKESKSR 412

Query: 574 HLN 582
             N
Sbjct: 413 LFN 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,088
Number of Sequences: 5004
Number of extensions: 71689
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)