Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_A13
(950 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.18
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 2.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.9
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 6.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.18
Identities = 26/90 (28%), Positives = 27/90 (30%)
Frame = -1
Query: 839 GGXVXXXGGXXXGVPPXPGXXXXXXPAGXXXXXXXXXXXXXXXFLRXXGXXGRSXXXTGG 660
GG GG G PP PG G G G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG---PGGFEGGPGGFGGG 243
Query: 659 PRGGGXGXXXVXGGXXGXPXXWGAXPXGXG 570
P G G G GG G P +G P G G
Sbjct: 244 PGGFGGGL----GGFGGGPGGFGGGPGGHG 269
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -1
Query: 665 GGPRGGGXGXXXVXGGXXGXPXXWGAXPXGXGXAAXG 555
G GG G GG G P +G P G G G
Sbjct: 217 GHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +1
Query: 556 PXAAXPX-PXGLAPXKXGXPXXPPXTXXXPXPPPRGPPV 669
P + P P AP + P PP P PPP PP+
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVP-PPPSAPPM 1723
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/40 (30%), Positives = 14/40 (35%)
Frame = -2
Query: 364 PRGGGPSSXXXGXLPPPXPXXPGXAGPPXXPSGSXSXXPP 245
P+ P PPP P P P+G S PP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 562 AAXPXPXGLAPXKXGXPXXPPXTXXXPXPPPRG 660
AA P P +A K G P P + P PP G
Sbjct: 1880 AAPPPPPPMALPKAGPPSAAPTSALPPAGPPAG 1912
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.9
Identities = 26/122 (21%), Positives = 29/122 (23%)
Frame = +1
Query: 571 PXPXGLAPXKXGXPXXPPXTXXXPXPPPRGPPVXXXDRPXXPXXRKKXXXXXXXXXXXXX 750
P P + P P P PPPR P P R
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398
Query: 751 XXPAGXXXXXXPGXGGTPXXXPPXXXTXPPGGKNXXXPXAXKNXXGPAPXXXXRXPXXPX 930
PA P PP + PP P A + AP P P
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPP---SLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI 455
Query: 931 XP 936
P
Sbjct: 456 AP 457
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -2
Query: 373 GXXPRGGGPSSXXXGXLPPPXPXXPGXAGP-PXXPSGSXSXXPP 245
G P G G S+ PPP P AG P P G + PP
Sbjct: 323 GKPPIGNGSSNSSLP--PPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Frame = +1
Query: 562 AAXPXPXGLA---PXKXGXPXXPPXTXXXPXPPPRGPP 666
AA P P P G P PP P PPP P
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 25.8 bits (54), Expect = 9.0
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = -2
Query: 379 PXGXXPRGGGPSSXXXGXLPPPXPXXPGXAGPPXXPSGSXSXXP 248
P G R P LPP P + PP P G+ + P
Sbjct: 405 PLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -2
Query: 349 PSSXXXGXLPPPXPXXPGXAGPPXXP 272
P+ G PPP P AGPP P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 325 LPPPXPXXPGXAGPPXXPSGSXSXXPP 245
+PPP P G PP P + + PP
Sbjct: 751 VPPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/37 (29%), Positives = 13/37 (35%)
Frame = +2
Query: 557 PRPXXPXPXXWXPXXAAXPXAPRXXXAXPPPXPAGPR 667
P P P W P P P + PP P P+
Sbjct: 155 PPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPNLPK 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.144 0.493
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,929
Number of Sequences: 5004
Number of extensions: 13240
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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