Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_A12
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 69 7e-13
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 68 2e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 66 6e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 66 6e-12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 65 1e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 65 1e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 64 3e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 63 6e-11
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 61 2e-10
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 60 4e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 59 7e-10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 58 2e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 57 4e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 56 7e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 56 7e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 56 9e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 56 9e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 51 3e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 47 4e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 47 4e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 40 5e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 37 0.003
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 37 0.004
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 31 0.16
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.66
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 1.2
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 29 1.2
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 28 2.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 3.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 3.5
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 26 6.2
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 69.3 bits (162), Expect = 7e-13
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +3
Query: 531 QALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGT--HQ 704
Q L+ + + G+ PTP+QR+ + +LE R +V A TGSGKTAAF++P++ L +
Sbjct: 78 QTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLAN 137
Query: 705 GGPRALILCPTRELA 749
RALIL P RELA
Sbjct: 138 SNTRALILSPNRELA 152
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 68.1 bits (159), Expect = 2e-12
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Frame = +3
Query: 537 LVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTH-QGGP 713
L + + + +E T +QR A+ + R ++ACAPTGSGKT A++ P+L L H GG
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGY 116
Query: 714 RALILCPTRELAHXNIQRGPATECSTQLXVTVVKNLKESKVKDREATFRK 863
RA+I+ PTREL ++ T L + + E K++++ R+
Sbjct: 117 RAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNE-KIQEKAPKLRE 165
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 66.1 bits (154), Expect = 6e-12
Identities = 38/86 (44%), Positives = 48/86 (55%)
Frame = +3
Query: 492 KDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFI 671
K FSDL + L+DT+ EPT +Q +A +LE R + A TGSGKTAAF
Sbjct: 7 KSFSDL----GISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFA 62
Query: 672 VPLLHTLGTHQGGPRALILCPTRELA 749
+P++ G ALIL PTRELA
Sbjct: 63 LPIIEKWSKDPSGIFALILTPTRELA 88
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 66.1 bits (154), Expect = 6e-12
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Frame = +3
Query: 441 RNEHGIKAVGRHIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDR 620
+ ++ I G +P L+++ + +P ++ + + Y EP+ +QR A+ +L+ +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEA----GLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
Query: 621 QIVACAPTGSGKTAAFIVPLLHTLG-----THQG---GPRALILCPTRELA 749
++ A TGSGKTAAFI+PL+ + T GP A++L PTRELA
Sbjct: 288 DLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELA 338
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 65.3 bits (152), Expect = 1e-11
Identities = 29/72 (40%), Positives = 46/72 (63%)
Frame = +3
Query: 537 LVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTHQGGPR 716
L + + G+ PTP+Q++A+ +L R ++ A TGSGKTAAF +P++ L +
Sbjct: 57 LCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFF 116
Query: 717 ALILCPTRELAH 752
A++L PTRELA+
Sbjct: 117 AVVLAPTRELAY 128
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 64.9 bits (151), Expect = 1e-11
Identities = 30/77 (38%), Positives = 48/77 (62%)
Frame = +3
Query: 519 YNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGT 698
Y + + L+ + + G+ P+P+Q +++ L R I+A A G+GKTAAF++P L + T
Sbjct: 49 YYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDT 108
Query: 699 HQGGPRALILCPTRELA 749
+ + LIL PTRELA
Sbjct: 109 KKSKIQTLILVPTRELA 125
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 63.7 bits (148), Expect = 3e-11
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Frame = +3
Query: 492 KDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFI 671
K FSD +N+ L + +C + +PT VQ + + LE + +VA A TGSGKTAA++
Sbjct: 14 KTFSD----FNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYL 69
Query: 672 VPLLHTL------GTHQGGPRALILCPTRELA 749
+P+L L +Q G AL+L PTRELA
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELA 101
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 62.9 bits (146), Expect = 6e-11
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Frame = +3
Query: 426 EENRFRNEHGIKAVGRHIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMAC 605
E +R E I G ++P + F + P ++ V Q G+ PTP+Q+QA
Sbjct: 100 EVTEYRKEKEIVVHGLNVPKPVTTFEEA----GFPNYVLKEVKQLGFEAPTPIQQQAWPM 155
Query: 606 MLEDRQIVACAPTGSGKTAAFIVP-LLH----TLGTHQGGPRALILCPTRELA 749
+ R +V + TGSGKT ++ +P ++H L + GP L+L PTRELA
Sbjct: 156 AMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELA 208
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 60.9 bits (141), Expect = 2e-10
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +3
Query: 522 NVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTL--- 692
N+ + ++ ++ G+ PT +Q + + L + IV A TGSGKTAAFIVP+L L
Sbjct: 265 NLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYR 324
Query: 693 GTHQGGPRALILCPTRELA 749
R LILCPTRELA
Sbjct: 325 PKKVPTTRVLILCPTRELA 343
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 60.1 bits (139), Expect = 4e-10
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Frame = +3
Query: 453 GIKAVGRHIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVA 632
GIK G P + +S + + + GY +PT +Q QA+ + R ++
Sbjct: 405 GIKIRGIDCPKPVTSWSQC----GLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIG 460
Query: 633 CAPTGSGKTAAFIVPLLHTLGTHQ-----GGPRALILCPTRELA 749
A TGSGKT AF++P+ + + GP A+I+ PTRELA
Sbjct: 461 VAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELA 504
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 59.3 bits (137), Expect = 7e-10
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +3
Query: 564 YSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVP---LLHTLGTHQGGPRALILCP 734
Y EPTP+Q +L R +V A TGSGKT AF +P L+ L ++ PR L++ P
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 735 TRELAHXNIQRGPATECSTQLXVTVV 812
TRELA + + T L VV
Sbjct: 245 TRELAIQTYENLNSLIQGTNLKAVVV 270
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 57.6 bits (133), Expect = 2e-09
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Frame = +3
Query: 420 QEEENRFRNEHGIKAVGRHIPPA--LKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQ 593
+E +N +E K+V + ++ FSDL + N+ +A + + G+ T +Q++
Sbjct: 63 EELDNENEDERVQKSVNLNASSTSDIEKFSDLQLSENIQKA----IKEMGFETMTEIQKR 118
Query: 594 AMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTHQGGPR----ALILCPTRELA 749
++ +L R ++ A TGSGKT AF++P + L + PR +I+ PTRELA
Sbjct: 119 SIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELA 174
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 56.8 bits (131), Expect = 4e-09
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Frame = +3
Query: 426 EENRFRNEHGIKAVGRHIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMAC 605
E+ R E I+ + I AL + D + Q + + T +Q+Q +
Sbjct: 14 EKKRKEEEEEIEELNSQIE-ALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPS 72
Query: 606 MLEDRQIVACAPTGSGKTAAFIVPLLHTL----GTHQGGPRALILCPTRELA 749
L+ R I+ A TGSGKT AFIVPL+ L T G AL++ PTRELA
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 56.0 bits (129), Expect = 7e-09
Identities = 28/76 (36%), Positives = 47/76 (61%)
Frame = +3
Query: 522 NVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTH 701
N+ L+ + G+ P+ +Q++A+ +L +R ++A A +G+GKTA F + +L + T
Sbjct: 25 NLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS 84
Query: 702 QGGPRALILCPTRELA 749
+ALIL PTRELA
Sbjct: 85 LKQCQALILAPTRELA 100
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 56.0 bits (129), Expect = 7e-09
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 522 NVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTL--- 692
N+ + L + V G+ + TPVQ A+ L+++ +V A TGSGKT A+++P +
Sbjct: 7 NIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRR 66
Query: 693 GTHQGGPRALILCPTRELA 749
T + G ALI+ PTRELA
Sbjct: 67 DTDETGLGALIVAPTRELA 85
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 55.6 bits (128), Expect = 9e-09
Identities = 28/76 (36%), Positives = 46/76 (60%)
Frame = +3
Query: 522 NVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTH 701
N+ + L+ + GY P+ VQ +A+ + + R ++A A +G+GKTA F + +L ++
Sbjct: 27 NLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS 86
Query: 702 QGGPRALILCPTRELA 749
+ALIL PTRELA
Sbjct: 87 VRDTQALILSPTRELA 102
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 55.6 bits (128), Expect = 9e-09
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +3
Query: 537 LVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLL 683
L+ + GY++PTPVQ+ ++ + R ++ACA TGSGKTA F+ P+L
Sbjct: 180 LLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 50.8 bits (116), Expect = 3e-07
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +3
Query: 519 YNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLL-HTL- 692
+++ ++ ++++ G+S+P P+Q + I+ A TGSGKT AF +P+L H L
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR 186
Query: 693 GTHQGGPRALILCPTRELAH 752
+AL++ PTRELAH
Sbjct: 187 NVDAKYVQALVVAPTRELAH 206
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 46.8 bits (106), Expect = 4e-06
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = +3
Query: 537 LVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTHQGGPR 716
L+ +T G+ P+ VQ+ + + ++ A +G GKTA F++ L + G
Sbjct: 62 LLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVS 121
Query: 717 ALILCPTRELA 749
L+LC TRELA
Sbjct: 122 VLVLCHTRELA 132
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 46.8 bits (106), Expect = 4e-06
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Frame = +3
Query: 486 ALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLED--RQIVACAPTGSGKT 659
++K F +L ++ P+ L+ + + +P+ +Q +A+ +L + R ++ + +G+GKT
Sbjct: 112 SVKSFEELELK---PE-LLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKT 167
Query: 660 AAFIVPLLHTLGTHQGGPRALILCPTRELAHXNIQRGPATECSTQLXVTVVKNLKESKVK 839
AAF + +L + P+A+ L P+RELA + TE V +K+S K
Sbjct: 168 AAFALTMLSRVDASVPKPQAICLAPSRELARQIMD--VVTEMGKYTEVKTAFGIKDSVPK 225
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 39.9 bits (89), Expect = 5e-04
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Frame = +3
Query: 567 SEPTPVQRQAMACML--EDRQIVACAPTGSGKTAAFIVPLLH-------TLGTHQGGPRA 719
S PT +Q + +L +D+ A TGSGKT A+++P++ L T G A
Sbjct: 160 SAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYA 219
Query: 720 LILCPTREL 746
+I+ PTREL
Sbjct: 220 VIMAPTREL 228
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 37.1 bits (82), Expect = 0.003
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Frame = +3
Query: 480 PPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQ----------IV 629
P +FS L N+ LV+ + + + VQ + +L+D + +
Sbjct: 122 PNTTVEFSSL----NISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVC 177
Query: 630 ACAPTGSGKTAAFIVPLLHTLGTHQGGP--RALILCPTREL 746
A TGSGKT ++++P++ L +H+ P R +++ PTREL
Sbjct: 178 VSAATGSGKTLSYVIPIVQCL-SHRTVPRLRCVVIVPTREL 217
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 36.7 bits (81), Expect = 0.004
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Frame = +3
Query: 543 DTVTQCGYSEPTPVQRQAMACMLEDRQ-IVACAPTGSGKTAAFIVPLLHTLGTHQGGPR- 716
+++++ G+ + TPVQ++ + + + + V A TG+GKT AF+ L+ +G PR
Sbjct: 51 NSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFL--LVAFKDVLKGKPRL 108
Query: 717 ------ALILCPTRELA 749
++IL PTRELA
Sbjct: 109 NSSKIHSVILSPTRELA 125
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 615 DRQIVACAPTGSGKTAAFIVPLLHTLGTH 701
D I+ CAPTG+GKT ++ +L+ L H
Sbjct: 535 DENILLCAPTGAGKTNVAMLCILNELQKH 563
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 636 APTGSGKTAAFIVPLLHTLGTHQGGPRALILCPTREL 746
AP GSGKT + LLH G A+ + P +E+
Sbjct: 1387 APNGSGKTVCAELALLHHWSQEDYG-TAVYIAPIQEI 1422
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.5 bits (63), Expect = 0.66
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 615 DRQIVACAPTGSGKTAAFIVPLLHTLGTH 701
+ ++ CAPTG+GKT ++ +L T+ +
Sbjct: 293 NENMLICAPTGAGKTDVALLAMLQTISNY 321
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 570 EPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTHQGGPRALILCPTRELA 749
+P QR+ + + D + APT SGKT + L + G + + PT+ L
Sbjct: 735 DPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGV-VIYVAPTKALV 793
Query: 750 H 752
+
Sbjct: 794 N 794
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 582 VQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTHQGGPRALILC-PTRELAHXN 758
V+ Q ++ + +++ ++ TGSGKT + L+ G H+ G +I C R +A +
Sbjct: 497 VREQLLSVIRDNQVLIVVGETGSGKTTQ-LAQFLYEDGYHRNG---MIGCTQPRRVAAMS 552
Query: 759 IQRGPATECSTQLXVTV 809
+ + + E +L TV
Sbjct: 553 VAKRVSEEMGVRLGSTV 569
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +3
Query: 474 HIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSG 653
H+ +D L +PQ D S+ + +++ + LE R ++ C P+G G
Sbjct: 60 HLNNLKEDRFQLWFEKYIPQKAADLAVH--KSKISAIKQWMLTDSLESRLLLICGPSGCG 117
Query: 654 KTAA 665
K+ A
Sbjct: 118 KSTA 121
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 606 MLEDRQIVACAPTGSGKTAAFIVPLL 683
+L ++ PTG GK+ +F++P L
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 606 MLEDRQIVACAPTGSGKTAAFIVPLL 683
+L ++ PTG GK+ +F++P L
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 618 RQIVACAPTGSGKTAAFIVPLLHTLGTHQGGPRALILCPTRELA 749
R+I TGSGKTA F + + + LIL +ELA
Sbjct: 47 RRIAVSLATGSGKTALFPHFIKYAPTLRPNSEQCLILVHRKELA 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,685
Number of Sequences: 5004
Number of extensions: 50770
Number of successful extensions: 179
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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