Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_A12
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       70   3e-14
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 69.7 bits (163), Expect = 3e-14
 Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
 Frame = +3

Query: 456 IKAVGRHIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVAC 635
           +   G ++P  ++ F    +R N+   ++D + + GY +PTPVQ+ A+  ++  R ++AC
Sbjct: 184 VNVSGDNVPQPIESFEAAGLR-NI---VLDNIKKSGYKKPTPVQKHALPIIMNGRDLMAC 239

Query: 636 APTGSGKTAAFIVPLLHTL---------GTHQGGPRALILCPTREL 746
           A TGSGKTAAF VP+++TL          +    P+ +I+ PTREL
Sbjct: 240 AQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTREL 285


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 576 TPVQRQAMACMLEDRQIVACAPTGS 650
           TP +R    C  +D  I+   P G+
Sbjct: 203 TPTERLEALCWTQDEDIICSTPIGN 227


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +3

Query: 576 TPVQRQAMACMLEDRQIVACAPTGS 650
           TP +R    C  +D  ++   P G+
Sbjct: 150 TPTERLEALCWTQDEDVICSTPIGN 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,299
Number of Sequences: 438
Number of extensions: 3573
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)