Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_A10
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   153   3e-38
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   151   2e-37
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   142   6e-35
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    31   0.21 
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    29   1.1  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   1.1  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    28   1.5  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   2.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   6.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   6.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   8.1  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  153 bits (371), Expect = 3e-38
 Identities = 74/152 (48%), Positives = 94/152 (61%)
 Frame = +2

Query: 224 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
           NKLK +++LRK C  NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G P
Sbjct: 51  NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIP 110

Query: 404 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 583
           PPFD               LKPGR YC VGRLS E+GWKY D+V KLE++RK K+     
Sbjct: 111 PPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AF 168

Query: 584 YEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 679
           Y+ KL +  K A    +K  +P    +  +GY
Sbjct: 169 YQAKLAKQKKIAS---AKEASPVNQKLSQFGY 197



 Score = 72.1 bits (169), Expect = 9e-14
 Identities = 32/44 (72%), Positives = 39/44 (88%)
 Frame = +1

Query: 88  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 219
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFF 49


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  151 bits (365), Expect = 2e-37
 Identities = 71/139 (51%), Positives = 89/139 (64%)
 Frame = +2

Query: 224 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
           NKLK +++LRK C  NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G P
Sbjct: 51  NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIP 110

Query: 404 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 583
           PPFD               LKPGR YC VGRLS E+GWKY D+V KLE++RK K+     
Sbjct: 111 PPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AF 168

Query: 584 YEKKLKRITKDAGEKVSKA 640
           Y+ KL +  K A  K + +
Sbjct: 169 YQAKLAKQKKIASAKAASS 187



 Score = 72.1 bits (169), Expect = 9e-14
 Identities = 32/44 (72%), Positives = 39/44 (88%)
 Frame = +1

Query: 88  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 219
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFF 49


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  142 bits (344), Expect = 6e-35
 Identities = 62/115 (53%), Positives = 79/115 (68%)
 Frame = +2

Query: 224 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
           NKLK +++LRK C  NP+RG FHFRAPS+I  K VRGM+PHKT RG  AL+ L+  +G P
Sbjct: 51  NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIP 110

Query: 404 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 568
           PPFD               LKP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 111 PPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165



 Score = 69.3 bits (162), Expect = 7e-13
 Identities = 29/44 (65%), Positives = 38/44 (86%)
 Frame = +1

Query: 88  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 219
           K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FF
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFF 49


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 557 KGKAVKRVAYEKKLKRITKDAGEKVSKATTP 649
           KGK V R+ Y+ K   +  D+GE+++K   P
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVDGP 570


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 198 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFQQRNSKIL 43
           D+ A N       +  L    RQ  QQM T   +YGL+ KAR  +  NS ++
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRNLNSMLI 176


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 115 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 219
           H L  + AV  K++  G K VV+RC+ I  + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 494 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEK 628
           R S E   K  D   K E+KR+ K  K+   EKK K+  K+  +K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 536 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFT 655
           R  + KR+ K  +R+AYE+ LKR  K   EK +K++   T
Sbjct: 647 RIAQQKREEK--RRLAYEESLKRHAKKLHEKKTKSSQDAT 684


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 548 DKRKGKAVKRVAYEKKLKRITKDAGE-KVSKATTPFTTIIQSYG 676
           DKR+   +  + YEK+L+ + K+  E  +     P  ++I+ YG
Sbjct: 18  DKRETIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLIKKYG 61


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 212  TSLXNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 340
            +S  N+ + MS   KRC     RG  HF    + L+  ++ ++
Sbjct: 1319 SSCGNRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 381 SLLRAFLPRSVLCGIIPLTVFHRILDGAL 295
           S L AFLP+  LC +IPL    + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 402 GHPSYVRSLLRAFLPRSVLCGIIP 331
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,987
Number of Sequences: 5004
Number of extensions: 60422
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)