Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_A09
         (1139 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    31   9e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.072
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.91 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.91 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   6.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   6.4  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 30.7 bits (66), Expect(2) = 9e-04
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 987 PPPPPPPPPXXXF 949
           PPPPPPPPP   F
Sbjct: 306 PPPPPPPPPSNDF 318



 Score = 27.9 bits (59), Expect(2) = 9e-04
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 999 GXXXPPPPPPPP 964
           G   PPPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +2

Query: 515 NPPPPPPPXXXXXXXXXXXXXXXXXPPPXFFXXPPPPPXKKKXGXPP 655
           +PPPPPP                  P       PPPPP     G PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 29.5 bits (63), Expect(2) = 0.072
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -3

Query: 987 PPPPPPPPP 961
           PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 999 GXXXPPPPPPPP 964
           G   PPPPPPPP
Sbjct: 772 GAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 987 PPPPPPPP 964
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect(2) = 0.96
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 984 PPPPPPPP 961
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 22.2 bits (45), Expect(2) = 0.072
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 999 GXXXPPPPPP 970
           G   PPPPPP
Sbjct: 759 GGPPPPPPPP 768



 Score = 21.0 bits (42), Expect(2) = 0.96
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 987 PPPPPP 970
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -3

Query: 987 PPPPPPPPP 961
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 8.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 515 NPPPPPPP 538
           NPPPPPPP
Sbjct: 188 NPPPPPPP 195



 Score = 26.2 bits (55), Expect = 8.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 987 PPPPPPPPP 961
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -3

Query: 987 PPPPPPPPP 961
           PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 23.4 bits (48), Expect(2) = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 987 PPPPPPPP 964
           P PPPPPP
Sbjct: 905 PTPPPPPP 912



 Score = 22.6 bits (46), Expect(2) = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 984 PPPPPPPP 961
           PPPPPP P
Sbjct: 907 PPPPPPLP 914


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 987 PPPPPPPP 964
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 984 PPPPPPPP 961
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.2 bits (55), Expect = 8.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 515 NPPPPPPP 538
           NPPPPPPP
Sbjct: 8   NPPPPPPP 15



 Score = 24.2 bits (50), Expect(2) = 2.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 987 PPPPPPPPPXXXFXXK 940
           PP  PPPPP   +  K
Sbjct: 20  PPSQPPPPPPPGYVKK 35



 Score = 22.2 bits (45), Expect(2) = 2.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 999 GXXXPPPPPP 970
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +2

Query: 518 PPPPPPPXXXXXXXXXXXXXXXXXPPPXFFXXPPPPPXKKKXGXPP 655
           PPPPPPP                   P     PPPPP     G  P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLP----PPPPPPRSNAAGSIP 352



 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +2

Query: 518 PPPPPPPXXXXXXXXXXXXXXXXXPPPXFFXXPPPPPXK 634
           PPPPPPP                  PP     PPPPP +
Sbjct: 337 PPPPPPPRSNAAGSIPL--------PPQGRSAPPPPPPR 367


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 987  PPPPPPPP 964
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 984  PPPPPPPP 961
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 987 PPPPPPPP 964
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 984 PPPPPPPP 961
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,931
Number of Sequences: 5004
Number of extensions: 26108
Number of successful extensions: 350
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 607615510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)