Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_A02
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.41 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.41 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.71 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.71 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 617 SRGCTSILRCISSS 658
           SRGCT++LRC+  S
Sbjct: 143 SRGCTAVLRCVVPS 156


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 617 SRGCTSILRCISSS 658
           SRGCT++LRC+  S
Sbjct: 143 SRGCTAVLRCVVPS 156


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 341 HFTIAVGRVYKSILCLSFVTNTCLYLW 261
           HF I +  +Y  +L +S V N C+ +W
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNCCV-IW 80


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 341 HFTIAVGRVYKSILCLSFVTNTCLYLW 261
           HF I +  +Y  +L +S V N C+ +W
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNCCV-IW 80


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 109 YIKYTHTPHEKNMAAATSE 53
           YIKY+HT HEK +    S+
Sbjct: 67  YIKYSHT-HEKKLVLERSK 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,261
Number of Sequences: 438
Number of extensions: 4939
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)