Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P24
         (880 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        31   5.5  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        31   5.5  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       31   5.5  
AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.           31   5.5  
Z48615-1|CAA88531.1|  953|Homo sapiens serine/threonine kinase w...    30   9.6  
X90846-1|CAA62351.1|  954|Homo sapiens mixed lineage kinase 2 pr...    30   9.6  

>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 20/44 (45%), Positives = 23/44 (52%)
 Frame = -3

Query: 698 EKGGQVSGKRQGRNRRAXRGSFPGGKRLVSL*SCRVSPPLT*AS 567
           EKG +VSGKR+GRN  A   S        S  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASA-AC-ASPAATAAS 44


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 20/44 (45%), Positives = 23/44 (52%)
 Frame = -3

Query: 698 EKGGQVSGKRQGRNRRAXRGSFPGGKRLVSL*SCRVSPPLT*AS 567
           EKG +VSGKR+GRN  A   S        S  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASA-AC-ASPAATAAS 44


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 20/44 (45%), Positives = 23/44 (52%)
 Frame = -3

Query: 698 EKGGQVSGKRQGRNRRAXRGSFPGGKRLVSL*SCRVSPPLT*AS 567
           EKG +VSGKR+GRN  A   S        S  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASA-AC-ASPAATAAS 44


>AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.
          Length = 326

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +3

Query: 648 RSPVPTLPLTGYLSAFLPSGSVALSHS 728
           R PV T+P+   L AF   GSV LSHS
Sbjct: 163 RGPVATIPIVLLLKAFPYCGSVVLSHS 189


>Z48615-1|CAA88531.1|  953|Homo sapiens serine/threonine kinase with
           SH3 domain, leucine zipper domain and proline rich
           protein.
          Length = 953

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = -2

Query: 696 ERRTGIR*AAGSEQESAXRELSRGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPA 517
           ER  G+    GS+Q S+    + G++P    +  GFA+ +   +F +A  GG +   +P 
Sbjct: 573 ERLKGL--GEGSKQWSSSAP-NLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPY 629

Query: 516 TRPFYGSWP 490
           + P Y S P
Sbjct: 630 STPSYLSVP 638


>X90846-1|CAA62351.1|  954|Homo sapiens mixed lineage kinase 2
           protein.
          Length = 954

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = -2

Query: 696 ERRTGIR*AAGSEQESAXRELSRGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPA 517
           ER  G+    GS+Q S+    + G++P    +  GFA+ +   +F +A  GG +   +P 
Sbjct: 574 ERLKGL--GEGSKQWSSSAP-NLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPY 630

Query: 516 TRPFYGSWP 490
           + P Y S P
Sbjct: 631 STPSYLSVP 639


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,486,400
Number of Sequences: 237096
Number of extensions: 2530988
Number of successful extensions: 11887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11879
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)