Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_P23
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 32 0.12
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 29 1.1
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 3.5
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 27 4.6
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc... 27 4.6
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 27 4.6
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 26 6.1
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 26 6.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 6.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 8.0
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 372 TELSKIANDEEEVPSTTSSQTLETLPPISTPTP-RIIEVTENVTEAELTKEAEVTTEVQE 548
+++++I N E +PS++ S+ ++ IST P R + TE +T A L ++E E
Sbjct: 513 SDIARIKNREINLPSSSLSKQRNSMHDISTNFPRRNLSFTEKLTMASLQGQSE------E 566
Query: 549 AIEPKPQPKL 578
+++PK L
Sbjct: 567 SVQPKTTSSL 576
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 28.7 bits (61), Expect = 1.1
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Frame = +3
Query: 381 SKIANDEEEVPSTTSSQTLETLPPISTPTPRIIEVT-----ENVTEAEL-TKEAEVTTEV 542
S + D +E+ + LP + + RI+E +N ++ L TK A E+
Sbjct: 342 SAVDEDLDEIFACEDDVHYTALPKQNPKSERILEPIIASPKDNTSDKGLLTKSAPTFEEL 401
Query: 543 QEAIEPKPQPKLLNLNVDELQNFANALHNQTIE 641
Q +I PKP N D ANA N+T E
Sbjct: 402 QASITPKPVKTSPN---DTALTLANAEDNKTFE 431
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 396 DEEEVPSTTSSQTLETLPPISTPTPRIIEVTENVT-EAELTKEAEVTTEVQ 545
DEE+VPST S L P S + NVT A ++K+ E+ ++
Sbjct: 190 DEEDVPSTESRGNLNARRPQSGLLKITVGSLRNVTHSAGISKQTEMIVAIR 240
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 459 TPTPRIIEVTENVTEAELTKEAEVTTEVQEAIEPKPQPKLLNLNVDELQNFANALH 626
TP+P I + L + ++T EV +AIE K + L E FA+ LH
Sbjct: 511 TPSPMIAINGNKINRKPLMEAVKLTHEVADAIEKKQFAHAMELRDPE---FADYLH 563
>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 167
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 408 VPSTTSSQTLETLPPISTPTPRIIEVTENVTEAELTKE 521
VP S + ++PP S+P PR + +T+ V ELTK+
Sbjct: 26 VPVRRSISSSSSIPPSSSPPPR-LTITQRV--KELTKK 60
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 570 PK-LLNLNVDELQNFANALHNQTIEKSSKRVW 662
PK L +++ E+ NF N L I KSS +W
Sbjct: 185 PKCFLGVDIVEIVNFFNYLPQTVISKSSLEIW 216
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 432 TLETLPPISTPTPRIIEVTENVTEAELTKEAEVTTEVQEAIEPKPQPKLLNLN 590
TL T+P I P E+ L T + ++ PKP+P L+ L+
Sbjct: 202 TLGTIPIIRCPQGSAAEMVAQKLNQRLKDHLMNTKDAFVSVNPKPRPILILLD 254
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 348 NHEYADCDTELSKIA-NDEEEVPSTTSSQTLETLPP 452
NH+Y D +I ND+E PST S + ET P
Sbjct: 325 NHDYPAEDLSAQEILKNDQETTPSTNDSSS-ETKSP 359
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 429 QTLETLPPISTPTPRIIEVTENVTEAELTKEAEVTTEVQEAIEPKP 566
++LET PPI +P P E + ++ ++ V PKP
Sbjct: 264 RSLETPPPIPSPRPPQPVAVEAIQQSRAVISQQLPLHVSPRKPPKP 309
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 417 TTSSQTLETLPPISTPTPRIIEVTENVTEAELTKEAEVTTEVQEA 551
TTSS T+ T PP +T P T +T + L+ +TEV+ A
Sbjct: 683 TTSSSTVST-PPPTTSFPSTF-TTSFITSSSLSSIPNNSTEVKTA 725
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,434
Number of Sequences: 5004
Number of extensions: 42772
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -