Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P21
         (1252 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    27   2.7  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    27   2.7  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    27   2.7  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    30   3.0  

>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 27.5 bits (58), Expect(2) = 2.7
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
 Frame = +1

Query: 277 PXPVRXAXPRXPXRXRXA-PRXXXEPPRCGXXXSPPXXAAGXPXXXXRXPRRXAXGXXXP 453
           P P R   P  P   R + P     PP+ G   SPP    G P    R  +R A     P
Sbjct: 310 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAG--GSPPPAGTGSPPPPPR-QKRQAPERSPP 366

Query: 454 VG 459
            G
Sbjct: 367 TG 368



 Score = 21.4 bits (43), Expect(2) = 2.7
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +1

Query: 580 PHRXPPXAPAPXXTPXXVXPP 642
           P R PP    P  +P    PP
Sbjct: 361 PERSPPTGSPPTGSPPTGRPP 381


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 27.5 bits (58), Expect(2) = 2.7
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
 Frame = +1

Query: 277 PXPVRXAXPRXPXRXRXA-PRXXXEPPRCGXXXSPPXXAAGXPXXXXRXPRRXAXGXXXP 453
           P P R   P  P   R + P     PP+ G   SPP    G P    R  +R A     P
Sbjct: 295 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAG--GSPPPAGTGSPPPPPR-QKRQAPERSPP 351

Query: 454 VG 459
            G
Sbjct: 352 TG 353



 Score = 21.4 bits (43), Expect(2) = 2.7
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +1

Query: 580 PHRXPPXAPAPXXTPXXVXPP 642
           P R PP    P  +P    PP
Sbjct: 346 PERSPPTGSPPTGSPPTGRPP 366


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 27.5 bits (58), Expect(2) = 2.7
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
 Frame = +1

Query: 277 PXPVRXAXPRXPXRXRXA-PRXXXEPPRCGXXXSPPXXAAGXPXXXXRXPRRXAXGXXXP 453
           P P R   P  P   R + P     PP+ G   SPP    G P    R  +R A     P
Sbjct: 289 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAG--GSPPPAGTGSPPPPPR-QKRQAPERSPP 345

Query: 454 VG 459
            G
Sbjct: 346 TG 347



 Score = 21.4 bits (43), Expect(2) = 2.7
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +1

Query: 580 PHRXPPXAPAPXXTPXXVXPP 642
           P R PP    P  +P    PP
Sbjct: 340 PERSPPTGSPPTGSPPTGRPP 360


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = +3

Query: 768 APXPPPXSXTLXXXVXFRXQRPPXRHTPXXPXXPPAXGRXRPXXXRXSPERNP 926
           AP PPP   T         + PP    P     PPA  R  P   R +P   P
Sbjct: 292 APQPPPRGSTAAPGT----RAPPATRAPPATRAPPATTRAPPATTRPAPASQP 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,363,643
Number of Sequences: 27780
Number of extensions: 132962
Number of successful extensions: 336
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3474674514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)