Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P20
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    28   2.1  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    27   4.8  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   4.8  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.3  

>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 271 KVQCPFDATHVVNDVELDFHVTVCPKRHMLDTQLYITDD 387
           ++ CP+D  H +    L++H+  C  R +  T  Y   D
Sbjct: 54  QIPCPYDHKHTIVRHRLEYHLKRCNARPVERTDPYYKKD 92


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -3

Query: 414 MDFHCRSVLVIRDVQLCVQHV-TFRAHSYMEIEFHIINDVCSIKRALHFVTSRMLFAALS 238
           +  H R ++V   + +   H+  F+  S++ +   I    C+I R L F+   +    L+
Sbjct: 394 LKIHRRPIIVFGSLSIIFIHIYCFKITSWVNLYGWI---TCTIARTLSFIKLNIRTFYLT 450

Query: 237 AGVCASCSVLLY 202
           A +CA  + L Y
Sbjct: 451 AFLCALLNFLRY 462


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 394 RPTVEVHATPVLPSDENWDDETSTSYIPDPSK 489
           R +V   A P+  +  +  DET TS+ PDP++
Sbjct: 259 RLSVRSPAHPIYQTQHSHYDETPTSHHPDPAR 290


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 206 SSTLQDAHTPAESAANNIRLVTKCSARLMLHTSLMMWNSI 325
           S   QD+ TP     +  RL +  SAR   H S   W+ I
Sbjct: 288 SKHFQDSGTPVSEEVSPTRLPSPTSARRASHLSEGKWDEI 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,031
Number of Sequences: 5004
Number of extensions: 53385
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)