Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P20
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597...    32   0.54 
03_05_0063 - 20375038-20375257,20375338-20375426,20375542-203757...    29   3.8  
03_06_0350 - 33306753-33307060,33307133-33307193,33307283-333074...    29   6.6  

>01_06_0515 -
           29959149-29959253,29959510-29959633,29959702-29959793,
           29959921-29960003,29960573-29960654,29960707-29960784,
           29960875-29960967,29961647-29961734,29961822-29961991
          Length = 304

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 220 GCTYTCRKCRKQHPACNKVQCPFDATHVVNDVELDFHVTVCPKRHML 360
           GC +  R+CR + P CN++   FD  H  N+ +    +    KRH L
Sbjct: 57  GCAHYRRRCRIRAPCCNEI---FDCRHCHNETKNSIKIDAV-KRHEL 99


>03_05_0063 -
           20375038-20375257,20375338-20375426,20375542-20375730,
           20377507-20378175,20379597-20379806
          Length = 458

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -3

Query: 357 HVTFRAHSYMEIEFHIINDVCSIKRALHFVTSRMLFAALSAGVCASCSVLLYAPXSYGHV 178
           H++     +M + F  + D  S+   + + T    + + S G   S S L+Y+     HV
Sbjct: 72  HISLAGEKHMRVTF--VTDDNSVPSVVDYGTEAGTYTSTSQGESTSYSYLMYSSGKIHHV 129

Query: 177 II 172
           +I
Sbjct: 130 VI 131


>03_06_0350 -
           33306753-33307060,33307133-33307193,33307283-33307458,
           33307551-33307608,33307730-33307834,33307924-33307981,
           33308072-33308238
          Length = 310

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 373 YITDDEYRPTVEVHATPVLPSDENWDDETSTSYIPDPSKKGAHV 504
           Y T   Y  TVE     V P+ E W+ +       D +KKG  V
Sbjct: 166 YATVLTYLSTVEKGGETVFPNAEGWESQPKDDSFSDCAKKGLAV 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,909,920
Number of Sequences: 37544
Number of extensions: 358098
Number of successful extensions: 864
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)