Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P20
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.        30   2.6  
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ...    30   2.6  
Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    29   5.9  
AF043700-3|AAB97572.3|  200|Caenorhabditis elegans Hypothetical ...    28   7.8  

>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
          Length = 1110

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +3

Query: 522 LDPLREAESEEGIDKDLQTIRVD 590
           ++PL++ + +E +D+DLQ IRVD
Sbjct: 595 VEPLQQQQQQEPMDQDLQDIRVD 617


>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
           protein Y47D3A.6a protein.
          Length = 1109

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +3

Query: 522 LDPLREAESEEGIDKDLQTIRVD 590
           ++PL++ + +E +D+DLQ IRVD
Sbjct: 594 VEPLQQQQQQEPMDQDLQDIRVD 616


>Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical
           protein F46B3.1 protein.
          Length = 186

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 223 CTYTCRKCRKQHPACNKV--QCPFDATHVVNDVELDFHVTVCPK 348
           C YTC  C+K    C+    +C  D    ++  E D +  +CPK
Sbjct: 44  CPYTCGLCKKDPNECSDTNDECQLD----MSPCETDQYQKICPK 83


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 229 YTCRKCRKQHPACNKVQCPFDAT-HVVND 312
           Y  +KC ++H  C+KV CP   T   VND
Sbjct: 496 YFGQKCDQKHDKCSKVSCPSGQTCSQVND 524


>AF043700-3|AAB97572.3|  200|Caenorhabditis elegans Hypothetical
           protein K09H9.8 protein.
          Length = 200

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 780 WXINXLSQQLXIYLV-LX*LQKKKHRYNW*IVTYTV 676
           W +  +   L + LV +  L+KKKHR+ W +V +T+
Sbjct: 66  WWLMWIGFHLVLILVTIYALRKKKHRFMWPMVLFTL 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,509,448
Number of Sequences: 27780
Number of extensions: 326827
Number of successful extensions: 934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)