Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_P19
(906 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 83 5e-17
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 82 1e-16
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 79 1e-15
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.23
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 30 0.39
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.6
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 3.7
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 27 3.7
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 8.5
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 83.0 bits (196), Expect = 5e-17
Identities = 34/64 (53%), Positives = 54/64 (84%)
Frame = +2
Query: 152 AIILAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGREKLSSM 331
A +L +GGK +P+A+D+E +LS+VGIEA++ +++ +I ELNGKD+++LIAAG EKL+++
Sbjct: 6 AYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATV 65
Query: 332 PVGG 343
P GG
Sbjct: 66 PTGG 69
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 81.8 bits (193), Expect = 1e-16
Identities = 35/64 (54%), Positives = 54/64 (84%)
Frame = +2
Query: 152 AIILAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGREKLSSM 331
A +L +GGK +P+A+D+E +LS+VGIEA+A +++ +I+ELNGK++E+LIAAG EKLS++
Sbjct: 6 AYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTV 65
Query: 332 PVGG 343
P G
Sbjct: 66 PSAG 69
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 78.6 bits (185), Expect = 1e-15
Identities = 32/64 (50%), Positives = 54/64 (84%)
Frame = +2
Query: 152 AIILAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGREKLSSM 331
A +L +GGK +P+A+D+E +LS+VGIE+++ +++ +I EL+GKD+++LIAAG EKL+++
Sbjct: 6 AYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATV 65
Query: 332 PVGG 343
P GG
Sbjct: 66 PSGG 69
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 31.1 bits (67), Expect = 0.23
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = -1
Query: 273 SSVITFLSXSASASIP--TELRIFSTSAAAGVVLPPSTASIIA 151
SSV T LS SAS+SIP + STS ++ V+P S++S+++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLS 50
Score = 25.8 bits (54), Expect = 8.5
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Frame = -1
Query: 321 SFSRPAAISCSTSL------PLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPSTAS 160
SF+ PA+ S TSL SS L+ S+SA++ + TS+++ L S++S
Sbjct: 70 SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSS 129
Query: 159 IIA 151
++A
Sbjct: 130 LVA 132
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 30.3 bits (65), Expect = 0.39
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -1
Query: 321 SFSRPAAISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPSTA-SIIARP 145
SF P+A + S P+SS+ +F + SA+++ P+ + S A P +T+ SII +
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSIINKE 510
Query: 144 RNA 136
+ A
Sbjct: 511 KPA 513
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Frame = -1
Query: 342 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVV 181
PPTG S S P + STS+P+ T + + S+ +PT STS
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234
Query: 180 LPPSTASIIARP 145
+P +S ++ P
Sbjct: 235 IPTGGSSSLSTP 246
Score = 27.5 bits (58), Expect = 2.8
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = -1
Query: 342 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVV 181
PPTG S S P + STS+P+ T + + S +PT STS
Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTT----STSCTTSTS 177
Query: 180 LPPSTAS 160
+PP+ S
Sbjct: 178 IPPTGGS 184
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 303 AISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPSTAS 160
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 288 TSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPSTASI 157
+ L + S T +S S+ S+PT+ + T + + V PPS S+
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSL 569
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -1
Query: 315 SRPAAISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPSTASII 154
S P+A+S +TS+P S+ + +S S S S T L S+S + V+ +T S +
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL---SSSGFSTVLSSTNTTSAL 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,368
Number of Sequences: 5004
Number of extensions: 25334
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -