Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_P19
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 81 9e-16
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 70 2e-12
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 69 4e-12
07_01_1001 - 8460467-8460799 52 8e-07
07_03_0321 + 16757414-16757743 50 3e-06
01_06_0098 - 26416768-26416998 32 0.72
06_03_0854 + 25400855-25403741,25406174-25407708 29 5.1
12_01_0090 + 717524-719080 29 6.7
04_04_1672 - 35242468-35243235,35243481-35243645 29 6.7
11_06_0264 - 21785450-21786928 28 8.9
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 81.4 bits (192), Expect = 9e-16
Identities = 36/65 (55%), Positives = 53/65 (81%)
Frame = +2
Query: 152 AIILAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGREKLSSM 331
A +LAVLGG T+P+A D++ IL SVG+EA+ +L+ +++EL GKD+ ++IAAGREK +S+
Sbjct: 6 AYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASV 65
Query: 332 PVGGG 346
P GGG
Sbjct: 66 PSGGG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 70.1 bits (164), Expect = 2e-12
Identities = 31/65 (47%), Positives = 46/65 (70%)
Frame = +2
Query: 152 AIILAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGREKLSSM 331
A +LA L G P+A D+ IL SVG E D K++ ++++L GKD+ ++IA+GREK +S+
Sbjct: 199 AYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASV 258
Query: 332 PVGGG 346
P GGG
Sbjct: 259 PCGGG 263
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 69.3 bits (162), Expect = 4e-12
Identities = 30/65 (46%), Positives = 47/65 (72%)
Frame = +2
Query: 152 AIILAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGREKLSSM 331
A ++A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GREK +S+
Sbjct: 6 AYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASV 65
Query: 332 PVGGG 346
P GGG
Sbjct: 66 PSGGG 70
>07_01_1001 - 8460467-8460799
Length = 110
Score = 51.6 bits (118), Expect = 8e-07
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +2
Query: 152 AIILAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGREKLSSM 331
A ++A +GG +P DV IL +VG + D KL + ++ GKD+ +++AAG E L+
Sbjct: 6 AYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLAFG 65
Query: 332 PVG 340
VG
Sbjct: 66 GVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +2
Query: 152 AIILAVLGGKTTPAAADVEKILSSVGIEADAXKLKKVITELNGKDVEQLIAAGREKLS 325
A ++A +GG +P DV IL +VG + D KL + ++ GKD+ +++AAG E L+
Sbjct: 6 AYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.9 bits (69), Expect = 0.72
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 188 PAAADVEKILSSVGIEADAXKLKKVITELNGKD 286
P V KI+ +V IEAD+ + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -1
Query: 345 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPP 172
PPP I + A +S P+S+V + L+ SASA+ F+ + A +PP
Sbjct: 1120 PPPAPIPAATPAKALVSAPAPAPISTVSSTLAASASAA-----AAFAPAPVAAEAIPP 1172
>12_01_0090 + 717524-719080
Length = 518
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 342 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSXSASASIPTELRIF 208
PP + S P ++ S+S SS + + ++S S+PT L F
Sbjct: 60 PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104
>04_04_1672 - 35242468-35243235,35243481-35243645
Length = 310
Score = 28.7 bits (61), Expect = 6.7
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Frame = -1
Query: 330 IDDSFSRPAAISCSTS------LPLSSVITFLSXSASASIPTELRIFSTSAAAGVVLPPS 169
+DD+FSR A +CS + L + + ITF ++ + +F++ A ++L P
Sbjct: 191 VDDAFSRKMAANCSANPNTKQDLDVVTPITF-DNGYYIALTRKQGVFTSDMA--LILDPQ 247
Query: 168 TASII---ARPRNAFFKS*LT 115
TA+I+ A+ + AFF +T
Sbjct: 248 TAAIVRRFAQDKAAFFTQFVT 268
>11_06_0264 - 21785450-21786928
Length = 492
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 345 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSXSASASIPTE 220
PPP + + S AIS + V FL S++A IPTE
Sbjct: 384 PPPPPLATAASTATAISVAGLGGCGDVALFLGKSSAACIPTE 425
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,006,729
Number of Sequences: 37544
Number of extensions: 190471
Number of successful extensions: 504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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