Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P17
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   2.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.5  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   8.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 2.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 463 PPPPPPP 443
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 21.8 bits (44), Expect(2) = 2.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 460 PPPPPPXGGXXXG 422
           PPPPPP      G
Sbjct: 361 PPPPPPRSAPSTG 373


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 463 PPPPPPPXG 437
           PPPPPPP G
Sbjct: 9   PPPPPPPPG 17


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 95  GPQREFAFATTKSQILXKEFP 33
           G +R +AF     QIL KEFP
Sbjct: 68  GLERRYAFVQKLEQILKKEFP 88


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 463 PPPPPPPXG 437
           PPPPPPP G
Sbjct: 761 PPPPPPPPG 769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,034,140
Number of Sequences: 5004
Number of extensions: 9889
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)