Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_P14
(899 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX571740-1|CAE11866.1| 603|Homo sapiens hypothetical protein pr... 32 3.3
AJ417067-1|CAD01135.1| 1286|Homo sapiens RPGR-interacting protei... 32 3.3
AJ417048-1|CAD01136.1| 1286|Homo sapiens RPGR-interacting protei... 32 3.3
AF265667-1|AAG10001.1| 645|Homo sapiens RPGR-interacting protei... 32 3.3
AF265666-1|AAG10000.1| 669|Homo sapiens RPGR-interacting protei... 32 3.3
AF260257-1|AAF91371.1| 902|Homo sapiens RPGR-interacting protei... 32 3.3
AF227257-1|AAG10246.1| 762|Homo sapiens RPGR-interacting protei... 32 3.3
M14268-1|AAA60694.1| 130|Homo sapiens T-cell receptor beta chai... 31 7.5
Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase w... 30 10.0
X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2 pr... 30 10.0
>BX571740-1|CAE11866.1| 603|Homo sapiens hypothetical protein
protein.
Length = 603
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 504 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPLTSITKIDAQVRGGETRQDYKXTR 683
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K +
Sbjct: 215 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSKISS 272
Query: 684 RFPPGNXP 707
+ P
Sbjct: 273 EEEKASFP 280
>AJ417067-1|CAD01135.1| 1286|Homo sapiens RPGR-interacting protein 1
protein.
Length = 1286
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 504 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPLTSITKIDAQVRGGETRQDYKXTR 683
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K +
Sbjct: 898 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSKISS 955
Query: 684 RFPPGNXP 707
+ P
Sbjct: 956 EEEKASFP 963
>AJ417048-1|CAD01136.1| 1286|Homo sapiens RPGR-interacting protein 1
protein.
Length = 1286
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 504 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPLTSITKIDAQVRGGETRQDYKXTR 683
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K +
Sbjct: 898 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSKISS 955
Query: 684 RFPPGNXP 707
+ P
Sbjct: 956 EEEKASFP 963
>AF265667-1|AAG10001.1| 645|Homo sapiens RPGR-interacting protein 1
isoform b protein.
Length = 645
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 504 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPLTSITKIDAQVRGGETRQDYKXTR 683
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K +
Sbjct: 257 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSKISS 314
Query: 684 RFPPGNXP 707
+ P
Sbjct: 315 EEEKASFP 322
>AF265666-1|AAG10000.1| 669|Homo sapiens RPGR-interacting protein 1
isoform a protein.
Length = 669
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 504 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPLTSITKIDAQVRGGETRQDYKXTR 683
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K +
Sbjct: 281 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSKISS 338
Query: 684 RFPPGNXP 707
+ P
Sbjct: 339 EEEKASFP 346
>AF260257-1|AAF91371.1| 902|Homo sapiens RPGR-interacting protein
protein.
Length = 902
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 504 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPLTSITKIDAQVRGGETRQDYKXTR 683
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K +
Sbjct: 514 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSKISS 571
Query: 684 RFPPGNXP 707
+ P
Sbjct: 572 EEEKASFP 579
>AF227257-1|AAG10246.1| 762|Homo sapiens RPGR-interacting protein-1
protein.
Length = 762
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 504 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPLTSITKIDAQVRGGETRQDYKXTR 683
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K +
Sbjct: 374 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSKISS 431
Query: 684 RFPPGNXP 707
+ P
Sbjct: 432 EEEKASFP 439
>M14268-1|AAA60694.1| 130|Homo sapiens T-cell receptor beta chain
precursor protein.
Length = 130
Score = 30.7 bits (66), Expect = 7.5
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -1
Query: 719 GERTGG--VSRGETPGXFIVLSGFATSDLSVDFCDARQGGRSLWKTPATR-PFYGSW 558
GE + G VSR +T + L +S SV FC G W+ P+T GSW
Sbjct: 72 GEVSDGYSVSRSKTEDFLLTLESATSSQTSVYFCAISGGPGGHWERPSTSGQARGSW 128
>Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase with
SH3 domain, leucine zipper domain and proline rich
protein.
Length = 953
Score = 30.3 bits (65), Expect = 10.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 692 GETPGXFIVLSGFATSDLSVDFCDARQGGRSLWKTPATRPFYGSWP 555
G++P + GFA+ + +F +A GG S+ +P + P Y S P
Sbjct: 593 GKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYSTPSYLSVP 638
>X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2
protein.
Length = 954
Score = 30.3 bits (65), Expect = 10.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 692 GETPGXFIVLSGFATSDLSVDFCDARQGGRSLWKTPATRPFYGSWP 555
G++P + GFA+ + +F +A GG S+ +P + P Y S P
Sbjct: 594 GKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYSTPSYLSVP 639
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,035,950
Number of Sequences: 237096
Number of extensions: 2414397
Number of successful extensions: 7050
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7048
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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