Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P12
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    30   0.51 
SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera...    28   2.1  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    27   2.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   3.6  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    27   4.7  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.3  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    26   8.3  

>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 727 LTTMPEPIIRPNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYVVFIRSF 554
           +TT   PII+    +  +H  ++  F   G LKT   +     K PA+ P V+ I+ F
Sbjct: 336 ITTANVPIIKFVDPLTKVHVDIS--FNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHF 391


>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
           I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 31  GNSLRFCLEKSNYAKFSSASFCQTSASNINFKVIIRTKTT 150
           GNSLR+ + K+   +F   S    S + +NF++     TT
Sbjct: 47  GNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTT 86


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 543 PQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVTLGLMIGSG 716
           P  +K+++K+      GS    AG + A          +A N W  ++VTL   +G G
Sbjct: 84  PVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYELATNQWPDLMVTLVANVGEG 141


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 715 PEPIIRPNVTIMDIHPFLATKFRSAGVLKTATALPAVSTKEPAMYPYV 572
           P+P   PNVT++   P  A + +   +  T + +P   T + +  P+V
Sbjct: 115 PQPQSHPNVTVISASPARAIEQQPTILSSTDSNIPRPGTVKSSASPFV 162


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 306 HKILYRET--MWSEIMHENLEQGSLHA 380
           H I++RET  +WSE+M     Q S++A
Sbjct: 78  HVIVWRETGGVWSELMDHTAHQASVNA 104


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 276 LNAERPIHIRDNIINSENVYVYFNRI 199
           +N  R +H+  N++  EN YV+ N I
Sbjct: 557 INPVRVLHVLINLLRDENSYVHLNVI 582


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 584 VSICCFYTFFHILWPKVRFPEEYLV 510
           V I  F+T   ++W   ++P+ +LV
Sbjct: 140 VGIASFFTMVMLIWQLYKYPDSFLV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,215
Number of Sequences: 5004
Number of extensions: 73925
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)