Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_P11
(857 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 200 2e-52
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 59 9e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 40 5e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.12
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.6
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 4.5
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 27 4.5
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 6.0
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 7.9
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 7.9
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 26 7.9
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 200 bits (488), Expect = 2e-52
Identities = 106/160 (66%), Positives = 118/160 (73%), Gaps = 3/160 (1%)
Frame = +3
Query: 315 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDS 485
D QFED +LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+
Sbjct: 66 DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125
Query: 486 GSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIK 665
GSPI IPVG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIK
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIK 185
Query: 666 VVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHG 785
VVDLLAPYA TV I ELINN+AKAHG
Sbjct: 186 VVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHG 225
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +1
Query: 787 GYSVFAGVXERTXEGNDLY 843
GYSVF GV ERT EGNDLY
Sbjct: 226 GYSVFTGVGERTREGNDLY 244
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 58.8 bits (136), Expect = 9e-10
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +3
Query: 396 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 572
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 573 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 686
I T + + +AP + + E + TG+K +D + P
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVP 186
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 39.9 bits (89), Expect = 5e-04
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +3
Query: 387 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 563
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 564 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 674
+ + I+ +E++ TGI +D
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSID 155
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.12
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = -2
Query: 661 IPVTRISCCTDMSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPE 482
+P T SC T S +G S+ ++ ++ + P S+ + I + S T P
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPT 280
Query: 481 SSTGCPRTKPSVPSMAMVRTVFSPKCWATSST 386
+ST C T S+P T +P TS++
Sbjct: 281 TSTSC-TTSTSIPPTGNSTTPVTPTVPPTSTS 311
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 571 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 437
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 4.5
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +3
Query: 378 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 557
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 558 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYA 692
+R P K A H + V+ ++ E + G KV + L P+A
Sbjct: 62 -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFA 103
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 26.6 bits (56), Expect = 4.5
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = -1
Query: 749 NQYSFAHTSSAKQPNLSSFGIRSEQIDDFYTSYENLLL---HRHVDKLWSFSMNSSSLVG 579
N +F + K+ L FG E + F Y LLL HR+ +K S+ L
Sbjct: 456 NWSNFLYNGKTKKIELLDFGASIEYDEKFIKKYCRLLLAAAHRNREKCKKLSVELGYLNN 515
Query: 578 GDGTALVNRFADYIDDASEGFS 513
+ +++ + I +E F+
Sbjct: 516 HESAQMIDAHINSIFTLAEPFA 537
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 196 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 306
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 447 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 563
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 577 GMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMA 434
G G ++S+GS + R+ PT MG S+ G T P+ A
Sbjct: 487 GHGSQTSLGSIKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFA 534
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 713 QPNLSSFGIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVG 579
+P+ SSF +E + S +LL+ + + KL SFS+ + S+ G
Sbjct: 322 KPDTSSFEKCAELMLTNQISTRSLLISKSIKKLTSFSILTQSIKG 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,247
Number of Sequences: 5004
Number of extensions: 70217
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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