Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P10
         (879 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    52   3e-05
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    38   0.44 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   9.6  
UniRef50_O78501 Cluster: Uncharacterized protein ycf36; n=1; Gui...    33   9.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 51.6 bits (118), Expect = 3e-05
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = -3

Query: 484 FLLLRWMDELTAHLVLSGYWSP 419
           FLLLRW+DELTAHLVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 37.5 bits (83), Expect = 0.44
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +1

Query: 655 DPDMIRYIDEXGQTPTXMQ 711
           DPDMIRYIDE GQT T MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2

Query: 296 AGWWYLPVWTPKRSYHQ 246
           A WWYLP  T KRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_O78501 Cluster: Uncharacterized protein ycf36; n=1;
           Guillardia theta|Rep: Uncharacterized protein ycf36 -
           Guillardia theta (Cryptomonas phi)
          Length = 155

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 537 KVYYTYIMIITLCIFLFFFYCLDGWTSSQPT 445
           K+YY +++ + LC+FLFF  CL+   S   T
Sbjct: 32  KLYYKFLLKMQLCLFLFFCICLNFLDSKYET 62


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,900,680
Number of Sequences: 1657284
Number of extensions: 12795218
Number of successful extensions: 26808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26766
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78702453312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)