Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P08
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    28   1.5  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   3.6  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    27   4.7  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    26   6.2  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 207 TPPRETIQKQIQQD-WANREYIEVITGS 287
           TP RE  ++Q  +D W + EY EV+ GS
Sbjct: 121 TPKREIARRQRDEDEWESDEYEEVVDGS 148


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 219 ETIQKQIQQDWANREYIEVITGS----IKKITDFLNSFDMSCRSRLATLNEKLTSLE 377
           +T+ + I+    +++ +  I G     IK + + ++S D      LA +NEK+ SLE
Sbjct: 402 QTLNRNIKVTSQSKDSLTSIVGDLESKIKSLHESVSSLDTERADLLAKINEKIESLE 458


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
 Frame = +3

Query: 108 LIKLDNSFKILKYRVNLLYKLF-KISRD*LYIMSTPPRETIQKQIQ----QDWANRE--- 263
           +I+ D   K+ +  + +L  L  K  +D    +ST   E + K +Q    + WA+ +   
Sbjct: 256 IIRSDTKTKVYRLVLAILVNLIDKAPKD---TISTMLLEHVDKAVQLLQKRKWADEDITN 312

Query: 264 YIEVITGSIKKITDFLNSFDM 326
           Y++ IT ++ + +  L++FDM
Sbjct: 313 YLDFITSTLDESSKHLSTFDM 333


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 382 FLSNDVNFSFKVARRDLQDMSNELRKSVIFFMLP 281
           F+S +VN  + +    +  M+N ++K  + F++P
Sbjct: 132 FMSENVNLQYALLNSIIDKMNNNIKKPNLEFLMP 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,306,121
Number of Sequences: 5004
Number of extensions: 65372
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)