Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P07
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   156   2e-38
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   156   2e-38
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    31   0.84 

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  156 bits (378), Expect = 2e-38
 Identities = 75/131 (57%), Positives = 95/131 (72%), Gaps = 1/131 (0%)
 Frame = +3

Query: 198 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 377
           ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+
Sbjct: 6   SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHL 65

Query: 378 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRIL 554
           Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL
Sbjct: 66  YFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRIL 124

Query: 555 TTQGRRDLDRI 587
           + QGR+DLDRI
Sbjct: 125 SKQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  156 bits (378), Expect = 2e-38
 Identities = 75/131 (57%), Positives = 95/131 (72%), Gaps = 1/131 (0%)
 Frame = +3

Query: 198 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 377
           ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+
Sbjct: 6   SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHL 65

Query: 378 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRIL 554
           Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL
Sbjct: 66  YFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRIL 124

Query: 555 TTQGRRDLDRI 587
           + QGR+DLDRI
Sbjct: 125 SKQGRKDLDRI 135


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 290 IHVLRYLDFARFF*VSSDSFNNL-VLFNILYCXRNASCRRKLLF 162
           I VL   D  R+   +SDS+N    L N+LYC  NA  ++ +L+
Sbjct: 237 IQVLNSSDSTRWILTTSDSWNKANALINLLYCTPNACPQQSMLW 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,931,319
Number of Sequences: 27780
Number of extensions: 310776
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)