Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P05
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    29   0.85 
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    27   4.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.0  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.9  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 150 LVNHFDIHCLLGS--WN--SGWHLHYCTSVHSVHRGVIWFSRFPII 275
           LV+  DI+C+ GS  W   S  H H    VHSV    I  SR PII
Sbjct: 258 LVHPEDIYCISGSSDWVCVSTQHFHCNIHVHSVSGNAIRKSRNPII 303


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -1

Query: 791 GKHNPTYFYGLNTLKNIKCII*VL 720
           GK++   F GLN L N KCII VL
Sbjct: 52  GKYSEV-FEGLNVLNNSKCIIKVL 74


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 265 FLLSVVQFPKYCAQAMMEGRGFN*FRHNF 351
           FLL+ +Q+ + C ++  E R +  F HNF
Sbjct: 396 FLLADIQWQRVCYKSFRESRTWLHFLHNF 424


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 13  YDLTIGNSLRFEYSSRTERGRPAL 84
           YD T+G+SLR  Y  R  +  P L
Sbjct: 280 YDKTLGSSLRESYMKRVNQAYPFL 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,490,870
Number of Sequences: 5004
Number of extensions: 75570
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)