Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P05
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016418-9|AAK18904.1|  186|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical ...    28   9.8  

>AF016418-9|AAK18904.1|  186|Caenorhabditis elegans Hypothetical
           protein C49G7.11 protein.
          Length = 186

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +3

Query: 621 ICSKM*FIYVHNRITDIIKITITVCPRVTAKIVKYLDNALNIL*RIQTIKVGGIMFTEFF 800
           IC+    +  H  + + +    TV  ++T    KYLD+ + I  R+ T K  G  F EF 
Sbjct: 104 ICAGPTVLLAHGIVAERVTCHYTVKDKMTEGGYKYLDDNVVISDRVITSKGPGTAF-EFA 162

Query: 801 LSII 812
           L I+
Sbjct: 163 LKIV 166


>AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.4 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 491 CTLQHKYRTTENKLFYLAITDHYEEREYCPLE 586
           CT +H  +  +N L    I +H E ++ C L+
Sbjct: 317 CTSEHSSKVLQNALLMKNILNHLERKDICRLQ 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,937,445
Number of Sequences: 27780
Number of extensions: 407579
Number of successful extensions: 794
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)