Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P04
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          31   0.28 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   4.6  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    26   6.1  

>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 474 VEKTPVVIKTIEEYAPGLVDNVQSYAST 557
           +E+ P+  KTI E  P ++++VQS A+T
Sbjct: 273 IEECPIATKTINEEYPKIIEDVQSRANT 300


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 830  QDXRNQSSTHKATIISNFELTSSSRYL*VYVNLLPEP 720
            Q  +N+S   + T+ SN  + +   +L  +++L PEP
Sbjct: 1988 QRKQNESENSETTLFSNSHIEAILTFLIKFLSLFPEP 2024


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +3

Query: 498 KTIEEYAPGLVD--NVQSYASTAWSGLKKYS--SDYYQITSDYLVTKV 629
           K +EEY  G  D  N++  +S +W   K+Y   S+ Y++  D    K+
Sbjct: 240 KIMEEYK-GKCDSENIEEASSNSWKAFKEYKLPSNVYEVLHDTRCVKI 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,445,468
Number of Sequences: 5004
Number of extensions: 70119
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)