Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_P04
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 650  RGTSE*NAVSSEYDKVPSFIILCMVPATGSHI 745
            +   E N VS+      +F++L +VPAT  H+
Sbjct: 1501 KNQQEWNQVSNNVKPGGNFVVLDLVPATWYHL 1532


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 211 CLGLEETSLXVQRESCSKIWAFLS-IVNRLGRRHCPPLLAV 330
           C G+  ++  ++ + C ++W   S ++N + R  CPP L V
Sbjct: 116 CSGIT-SAYKIEIDMCDRLWVLDSGLINNV-RSVCPPQLLV 154


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 610 TIWLLKFLLVIGPQRYFRIKRS 675
           T+W+L F++   P   ++ KRS
Sbjct: 188 TVWILSFVICFPPLVGWKDKRS 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,897
Number of Sequences: 438
Number of extensions: 5145
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)