Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_O19
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical
           protein B0310.3 protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 198 FNYITYFIIALQRGKYFSVYIFIYYYLCTTSLQIKGNMTFPY 73
           +N+  YF+I         VY+ ++ Y+CT  L +  +  FPY
Sbjct: 392 YNFKRYFLI-------IGVYVLVFIYVCTNVLTVGVSYEFPY 426


>Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical
           protein B0391.12 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = -1

Query: 462 LKSGIDSSRKSK*SWSMENISMSSFGAVHVSDMRPSSNSIFFYTFDLVMLITRHTLVKNP 283
           + S  +SS  S+  W++   ++     +H+      S SIF Y+F+L+  I   T++  P
Sbjct: 232 ISSSAESSLNSQLFWALVFQTIIPVILMHIPACAAFSFSIFDYSFELLGEIPTVTILLYP 291

Query: 282 VFSENF*NSFCSDKNSVEVIV 220
           V       +FC  KN  + I+
Sbjct: 292 VLDPL--PNFCIIKNYRQAIL 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,282,483
Number of Sequences: 27780
Number of extensions: 312427
Number of successful extensions: 685
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)