Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_O19
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   1.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   1.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   4.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   4.9  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   6.5  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 356 EGLMSDTWTAPNELMEIFSMDQ 421
           +G  S++W A NEL + F ++Q
Sbjct: 304 QGFPSNSWVAINELQDSFWLEQ 325


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 356 EGLMSDTWTAPNELMEIFSMDQ 421
           +G  S++W A NEL + F ++Q
Sbjct: 272 QGFPSNSWVAINELQDSFWLEQ 293


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 408 NISMSSFGAVHVSDMRPSSNSI 343
           N+SMSS G     DM+P + S+
Sbjct: 36  NMSMSSVGPQSPLDMKPDTASL 57


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 408 NISMSSFGAVHVSDMRPSSNSI 343
           N+SMSS G     DM+P + S+
Sbjct: 36  NMSMSSVGPQSPLDMKPDTASL 57


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 416 DQDYLDFLEESIPDFNICSENVSETSK 496
           D++ L F+E ++  FN+  EN +   K
Sbjct: 56  DENVLLFIECTMKKFNVVDENANFNEK 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,108
Number of Sequences: 438
Number of extensions: 3979
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)