Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_O18
(1193 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 34 0.25
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 32 1.0
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.4
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 31 2.4
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 3.1
03_01_0515 - 3864796-3865425 30 3.1
08_01_0059 - 394001-394708 29 5.5
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 29 5.5
01_03_0270 + 14445240-14445464,14445490-14445655,14446193-144463... 29 5.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 7.2
07_01_0080 + 587674-588510 29 7.2
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 7.2
06_03_1326 - 29355467-29355817 29 9.5
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 33.9 bits (74), Expect = 0.25
Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Frame = +1
Query: 943 PPPTEXXRGGXXXQNXPP-PXLAPXRXGGRPTRXPSXLXXGGXHPXXXFXXXPP------ 1101
PPP+E ++ PP P +P G PS + P PP
Sbjct: 799 PPPSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSP 858
Query: 1102 PXXLXVXXLPPXXXTPPPPLXXXPSPXT 1185
P V PP +PPPP P T
Sbjct: 859 PPEAHVSSPPPPEKSPPPPETKSPPTLT 886
Score = 29.5 bits (63), Expect = 5.5
Identities = 20/78 (25%), Positives = 23/78 (29%)
Frame = +1
Query: 946 PPTEXXRGGXXXQNXPPPXLAPXRXGGRPTRXPSXLXXGGXHPXXXFXXXPPPXXLXVXX 1125
PP+E PP A P + PS P PP V
Sbjct: 790 PPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSS 849
Query: 1126 LPPXXXTPPPPLXXXPSP 1179
PP + PPP SP
Sbjct: 850 PPPEKSSSPPPEAHVSSP 867
>09_06_0107 + 20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 31.9 bits (69), Expect = 1.0
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +1
Query: 1069 HPXXXFXXXPPPXXLXVXXLPPXXXTPPPPLXXXPSPXT 1185
HP PPP PP PPPP P+P T
Sbjct: 64 HPHHHVSAAPPPPQTPPSPPPPPPPPPPPPPPLSPTPTT 102
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 806 PPXXFXKKXPPXPXPXXGGCPPPPXXXG 889
PP K PP P P G PPPP G
Sbjct: 344 PPPPPPAKGPPPPPPPKGPSPPPPPPPG 371
Score = 29.5 bits (63), Expect = 5.5
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +2
Query: 794 GEQTPPXXFXKKXPPXPXPXX--GGCPPPPXXXGXS 895
G PP PP P P GG PPPP G S
Sbjct: 352 GPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGAS 387
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 30.7 bits (66), Expect = 2.4
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +2
Query: 794 GEQTPPXXFXKKXPPXPXPXXGGCPP-PPXXXGXS--HKKK 907
G++ PP K PP P P PP PP G + H KK
Sbjct: 137 GQEPPPPHVPKAAPPPPPPPPPHAPPGPPPTKGVATPHAKK 177
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 3.1
Identities = 26/91 (28%), Positives = 29/91 (31%), Gaps = 12/91 (13%)
Frame = +1
Query: 943 PPPTEXXRGGXXX-QNXPPPXLAPXRX---GGRPTRXPSXLXXGGXH--------PXXXF 1086
PPP + G Q PPP LAP G P P G P +
Sbjct: 31 PPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYY 90
Query: 1087 XXXPPPXXLXVXXLPPXXXTPPPPLXXXPSP 1179
PPP V P PPPP +P
Sbjct: 91 QPPPPPPPYGVNSSQPPPPPPPPPSPPPSAP 121
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.3 bits (65), Expect = 3.1
Identities = 21/79 (26%), Positives = 23/79 (29%), Gaps = 1/79 (1%)
Frame = +1
Query: 946 PPTEXXRGGXXXQNXPPPXLAPXRXGGRPTRXPSXLXXGGXHPXXXFXXXPPPXXLXVXX 1125
P E + PPP P P + P PPP L
Sbjct: 33 PEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPP 92
Query: 1126 LPPXXX-TPPPPLXXXPSP 1179
PP PPPP PSP
Sbjct: 93 PPPAASPPPPPPSPPPPSP 111
>08_01_0059 - 394001-394708
Length = 235
Score = 29.5 bits (63), Expect = 5.5
Identities = 22/79 (27%), Positives = 25/79 (31%)
Frame = +1
Query: 943 PPPTEXXRGGXXXQNXPPPXLAPXRXGGRPTRXPSXLXXGGXHPXXXFXXXPPPXXLXVX 1122
PPP R PPP P R P P PPP +
Sbjct: 2 PPPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPP--------PPTPRPYAPPPPSHPLA 53
Query: 1123 XLPPXXXTPPPPLXXXPSP 1179
PP +PP P+ PSP
Sbjct: 54 P-PPPHISPPAPVPPPPSP 71
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 29.5 bits (63), Expect = 5.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 797 EQTPPXXFXKKXPPXPXPXXGGCPPPP 877
E PP K+ PP P P CPPPP
Sbjct: 221 EPEPPK---KEPPPPPPPKQEPCPPPP 244
>01_03_0270 +
14445240-14445464,14445490-14445655,14446193-14446341,
14446634-14446674,14447683-14447755
Length = 217
Score = 29.5 bits (63), Expect = 5.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 833 PPXPXPXXGGCPPPP 877
PP P P GG PPPP
Sbjct: 12 PPSPPPSCGGIPPPP 26
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 7.2
Identities = 23/74 (31%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Frame = +1
Query: 943 PPPTEXXRG-GXXXQNXPPPXLAPXRXGGRPTRXPSXLXXGGXHPXXXFXXXPPPXXLXV 1119
PPP G PPP A P P L G P PPP
Sbjct: 718 PPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPP----PPPPQAPK 773
Query: 1120 XXLPPXXXTPPPPL 1161
PP PPPPL
Sbjct: 774 ---PPGTVPPPPPL 784
>07_01_0080 + 587674-588510
Length = 278
Score = 29.1 bits (62), Expect = 7.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 818 FXKKXPPXPXPXXGGCPPPP 877
F + PP P P G PPPP
Sbjct: 88 FRRPPPPPPPPPSSGSPPPP 107
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 7.2
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +2
Query: 794 GEQTPPXXFXKKXPPXPXPXXG--GCPPPPXXXG 889
G PP PP P P G G PPPP G
Sbjct: 1096 GVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGG 1129
>06_03_1326 - 29355467-29355817
Length = 116
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 1178 GEGXXXSGGGGVXXXGGSXXTXRXXGGG 1095
G+G GGGG GGS R GGG
Sbjct: 12 GKGGGGGGGGGKGGGGGSGGGGRSGGGG 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,535,189
Number of Sequences: 37544
Number of extensions: 464688
Number of successful extensions: 2072
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1825
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3643211076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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