Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_O15
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                31   0.011
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   5.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.7  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 31.5 bits (68), Expect = 0.011
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +2

Query: 515 IGNGSFGVVYQAKLCDTGELIAIKKVLQDKRFKN--RELQIMRRLEHCNIVKL 667
           +G+G FG+VY+A     GE +A  K++Q +++ N     +    L+H NIVK+
Sbjct: 73  LGSGGFGIVYKALY--KGEQVA-AKIIQTEKYSNMLNSEKHASFLKHSNIVKV 122


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +2

Query: 593 LQDKRFKNRELQIMRRLEHCNIVKLKYFFYSSGEKKDEVYLNLVLEYIPETVXQSGASLL 772
           L DK+FKN+ L ++   +   + +L     ++  K+D   +  VL +I +       ++L
Sbjct: 43  LMDKQFKNKSLPVIEIWDQMTVKEL-----ANSAKRDINDVLNVLYFINKNDKYEENTIL 97

Query: 773 QRRTTIPLVYKLYMY 817
              TT+PL+  +  Y
Sbjct: 98  ---TTMPLLINVVKY 109


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -1

Query: 144 FHYKNYKYHFDNFSK 100
           ++  NYKY+++N++K
Sbjct: 324 YNNNNYKYNYNNYNK 338


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 226 TTLSNTNSMKKYLKQYHYYEIK 161
           T + NTN   KY+++Y+  E K
Sbjct: 199 TYIVNTNYSSKYMREYNDPEYK 220


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 223 TLSNTNSMKKYLKQYHYYEIKNQNKIVPL 137
           T+ N N+ K Y K+ +Y  I  +   VP+
Sbjct: 322 TIHNNNNYKNYNKKLYYNIINIEQIPVPV 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,560
Number of Sequences: 438
Number of extensions: 4886
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)