Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_O13
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    36   0.010
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    33   0.072
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    32   0.095
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    27   4.7  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   6.3  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   8.3  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   8.3  

>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 405 GGMVFNSQNQILVVVEQHTDIVHWKLPGGYVERGEDIKDAVIREVMEETGIEAS 566
           G ++ +   Q  V+V+       W  P G +++ E   D  IREV EETG + S
Sbjct: 100 GAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCS 153


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 11/24 (45%), Positives = 20/24 (83%)
 Frame = +3

Query: 489 GYVERGEDIKDAVIREVMEETGIE 560
           G++E GE +++AV+RE  EE+G++
Sbjct: 259 GFLEPGESLEEAVVRETYEESGVD 282


>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +3

Query: 477 KLPGGYVERGEDIKDAVIREVMEETGIEASFDSIVTLRHSHNSMFGNSDIYIVV 638
           ++P G V+  E  +DA IRE+ EETG   +     T+ ++   +  N+++ I++
Sbjct: 86  EIPAGLVDSKESCEDAAIRELREETGYVGTVMDSTTVMYNDPGL-TNANLKIIL 138


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 468 VHWKLPGGYVERGEDIKDAVIREVMEETGIE 560
           V+ KLP  ++ +G+   DA+ R  +EE  IE
Sbjct: 576 VYHKLPESFIGQGKFGADAIQRRAVEELNIE 606


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 480 LPGGYVERG-EDIKDAVIREVMEETGIEASFDSIVTLRHSHNS 605
           L GG V +G +DI   V+    E+TG+    DS  TL  +  S
Sbjct: 426 LTGGSVSKGADDILQHVLHLKSEQTGVVVGPDSTPTLSFTSGS 468


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 372 LPPACHT-NLGVGGMVFNSQNQILVVVEQHTD--IVHWKLPGGYVERGEDIKDAVIREVM 542
           + PAC   N+ +G       + + +V E   D  ++ +K  G +  R ED+   VIR   
Sbjct: 729 MKPACFLKNVAIGEKYVEPYDHMEIVDETTGDKAVIRFKSGGMFSGRSEDVLVTVIRSNG 788

Query: 543 EE 548
           EE
Sbjct: 789 EE 790


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 349 CLQTAKPICHQHAIQILV*EVWSLIAK 429
           CL++ +P+C++H  +I   ++W L+ K
Sbjct: 427 CLESIEPLCNKHEKKIF--KLWLLVLK 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,723
Number of Sequences: 5004
Number of extensions: 56631
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)