Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_O11
(989 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0034 - 401208-402923 31 1.9
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 30 2.5
03_01_0515 - 3864796-3865425 30 2.5
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 3.3
02_05_0686 - 30900748-30902167,30903442-30904742 30 3.3
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 5.7
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 5.7
07_01_0479 + 3606663-3607448 29 5.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 7.6
>04_01_0034 - 401208-402923
Length = 571
Score = 30.7 bits (66), Expect = 1.9
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 423 RXXXXPPPPQGXXAXGHXPPXXPXDXDPPXK 331
R PPPPQ A PP P DPP +
Sbjct: 304 RPAPPPPPPQQQRAKPSRPPPPPPPLDPPPR 334
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = -2
Query: 460 PGXXXGXP-GXXXPAXXXPPPXPGXXSXRPPPP 365
PG P G P PPP PG PPPP
Sbjct: 428 PGSYAPVPWGQPPPYASYPPPPPGSSMYNPPPP 460
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.3 bits (65), Expect = 2.5
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -2
Query: 502 PPRGGPXXXXGXXXPGXXXGXPGXXXPAXXXPPPXPGXXSXRPPPP 365
PP GP P P P PPP P S PPPP
Sbjct: 63 PPAAGPLMPPPPPPPSVTSSPP----PPPLPPPPPPPAASPPPPPP 104
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = -2
Query: 508 GEPPRGGPXXXXGXXXPGXXXGXPGXXXPAXXXPPPXP-GXXSXRPPPP 365
G PP P G P P PPP P G S +PPPP
Sbjct: 61 GPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPP 109
Score = 29.1 bits (62), Expect = 5.7
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = -3
Query: 444 GPPXXXXRXXXXPPPPQGXXAXGHXPPXXPXDXDPPXKGPK 322
GPP PPPQG PP P PP P+
Sbjct: 29 GPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQ 69
Score = 29.1 bits (62), Expect = 5.7
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = -3
Query: 441 PPXXXXRXXXXPPPPQGXXAXGHXPPXXPXDXDPPXKGP 325
PP PPPP G + PP P PP P
Sbjct: 84 PPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPP 122
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Frame = -2
Query: 502 PPRGGPXXXX--GXXXPGXXXGXPGXXXPAXXX--PPPXPGXXSXRPPPP 365
PP+ P G P G P P PPP PG PPPP
Sbjct: 331 PPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPP 380
Score = 29.5 bits (63), Expect = 4.3
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Frame = -3
Query: 441 PPXXXXRXXXXPPPPQGXX----AXGHXPPXXPXDXDPPXKGP 325
PP + PPPP+G A G PP P PP P
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
Score = 29.1 bits (62), Expect = 5.7
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 441 PPXXXXRXXXXPPPPQGXXAXGHXPPXXPXDXDPPXKGP 325
PP PPPP A PP PP KGP
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGP 353
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.1 bits (62), Expect = 5.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 439 PGXXXPAXXXPPPXPGXXSXRPPPP 365
P P PPP PG PPPP
Sbjct: 616 PPPRPPGAPPPPPPPGKPGGPPPPP 640
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.1 bits (62), Expect = 5.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 439 PGXXXPAXXXPPPXPGXXSXRPPPP 365
P P PPP PG PPPP
Sbjct: 921 PPPRPPGAPPPPPPPGKPGGPPPPP 945
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.1 bits (62), Expect = 5.7
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = -2
Query: 508 GEPPR--GGPXXXXGXXXPGXXXGXPGXXXPAXXXPPPXPGXXSXRPPPP 365
G PP GGP G G P P PP PG PPPP
Sbjct: 192 GVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPP-PGMRPGMPPPP 240
Score = 28.7 bits (61), Expect = 7.6
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -2
Query: 496 RGGPXXXXGXXXPGXXXGXPGXXXPAXXXPPPXPGXXSXRPPPP 365
RG P PG G P P PP PG PPPP
Sbjct: 210 RGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMP---PPPP 250
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.7 bits (61), Expect = 7.6
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = -3
Query: 495 GGDPXXXRGXRXRGXXXGPPXXXXRXXXXPPPPQGXXAXGHXPPXXPXDXDPP 337
GG P RG PP PPPP+G G PP P PP
Sbjct: 1158 GGPPAPPPPAGFRGGTP-PPNAHGGVAPPPPPPRGHGGVG-GPPTPPGAPAPP 1208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,540,885
Number of Sequences: 37544
Number of extensions: 205723
Number of successful extensions: 1750
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2893540780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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