Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_O09
(957 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.006
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.011
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 35 0.015
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.045
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.73
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 28 1.7
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 26 6.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.8
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 9.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.3 bits (80), Expect = 0.006
Identities = 31/112 (27%), Positives = 35/112 (31%), Gaps = 4/112 (3%)
Frame = +3
Query: 558 RPXPPXXPRXPXXGAPRXXGRAXGXXXPRPXXXP---GXGXPXPPPXPXNPGXPPXPRGX 728
RP PP P G P + P P P G PP + PP PR
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA 369
Query: 729 XGXGGXPGPPXXXPXGGAXTPXXGPGGGGPXXXXGAXPP-GGXXXXTPPPXP 881
G P PP + P P P A PP G + PP P
Sbjct: 370 PSTGRQP-PPLSSSRAVSNPP--APPPAIPGRSAPALPPLGNASRTSTPPVP 418
Score = 31.9 bits (69), Expect = 0.14
Identities = 29/97 (29%), Positives = 32/97 (32%)
Frame = -1
Query: 813 PPPRALXGGSXPXPXGPXGGARXPXPXLXPPGGXGGXRGXXGXGGGXXPPGRXXXXGGGP 634
PPPR+ GS P P P G + P P PP G PP P
Sbjct: 341 PPPRSNAAGSIPLP--PQGRSAPPPP---PPRSAPST-------GRQPPPLSSSRAVSNP 388
Query: 633 XXPXPAPPXGAPXXXGXGVXPXGXAGXX*XGXXPAPP 523
PAPP P + P G A P PP
Sbjct: 389 ----PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421
Score = 31.5 bits (68), Expect = 0.18
Identities = 31/132 (23%), Positives = 32/132 (24%), Gaps = 2/132 (1%)
Frame = +2
Query: 566 PXGXTPXPXXXGAPXGGAGXGXXG-PPPXXXXRPGGXXPPPXPXXPRXPPXPPGGXRXGX 742
P P G P G G PPP R P P R P PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371
Query: 743 GXRAPPXGPXGXGXDXXXXXXXXXXXXPKXGXPPRGXXXK-XPPPXXXGGXXPXGAXGXX 919
R PP PP G + PP P A
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSL 431
Query: 920 XXXXPPPPPPGA 955
PP P GA
Sbjct: 432 PPSAPPSLPMGA 443
Score = 29.5 bits (63), Expect = 0.73
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = -3
Query: 814 PPPPGPXXGVXAPPXGXXXGGPGXPPXPXSPRGXGGXPGXXGXGGGXGXPXP 659
PPPP PP G PP P PR G P P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Score = 29.5 bits (63), Expect = 0.73
Identities = 39/147 (26%), Positives = 40/147 (27%), Gaps = 20/147 (13%)
Frame = +3
Query: 501 PVPTXPRTG--GQXXXRXXXXRPXPPXXPRX-PXXGA---PRXXGRAXGXXXPRPXXXPG 662
P P PR+ G PP PR P G P RA P PG
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 663 XGXPX-----------PPPXPXNPGXPPXPRGXXGXGGXPGPPXXXPXGGAXTPXXGPGG 809
P PP P P PP P P P G P P
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSL----PPSAPPSLPMGAPAAPPLPPSA 453
Query: 810 G-GPXXXXG--AXPPGGXXXXTPPPXP 881
P G A PP PPP P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 865 PPPPXRGXGXXXGGPXXXXXXXPPPPPP 948
PPP R G G PPPPPP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = +3
Query: 666 GXPXPPPXPXN-PGXPPXPRGXXGXGGXPGPPXXXPXGGAXTPXXGPGGGGPXXXXGAXP 842
G P PP P + P PP P G P P P A P P P P
Sbjct: 442 GAPAAPPLPPSAPIAPPLP------AGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495
Score = 27.5 bits (58), Expect = 3.0
Identities = 21/73 (28%), Positives = 21/73 (28%)
Frame = -3
Query: 814 PPPPGPXXGVXAPPXGXXXGGPGXPPXPXSPRGXGGXPGXXGXGGGXGXPXPGXXXGRGX 635
PP P P V A P PP P S R G P G P P
Sbjct: 290 PPLPPPSSRVSAAALAANKKRP-PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA 348
Query: 634 XXPXARPXXRGAP 596
P R AP
Sbjct: 349 GSIPLPPQGRSAP 361
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +1
Query: 865 PPPPXRGXGXXXGGPXXXXXXXPPPPPPRGP 957
PPPP P PPPPP P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Score = 25.8 bits (54), Expect = 9.0
Identities = 18/71 (25%), Positives = 19/71 (26%), Gaps = 1/71 (1%)
Frame = +3
Query: 561 PXPPXXPRXPXXGAPRXXGRAXGXXXPRPXXXPGXGXPXPPPXPXN-PGXPPXPRGXXGX 737
P PP P P + P P P PP P P PP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP-PSAPIAPPLPAGMPAAPPLPPAAPAP 476
Query: 738 GGXPGPPXXXP 770
P P P
Sbjct: 477 PPAPAPAPAAP 487
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.5 bits (78), Expect = 0.011
Identities = 25/104 (24%), Positives = 28/104 (26%)
Frame = +3
Query: 570 PXXPRXPXXGAPRXXGRAXGXXXPRPXXXPGXGXPXPPPXPXNPGXPPXPRGXXGXGGXP 749
P P P+ +A P P PP P PP P+ G P
Sbjct: 1004 PAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAP 1063
Query: 750 GPPXXXPXGGAXTPXXGPGGGGPXXXXGAXPPGGXXXXTPPPXP 881
PP P P G P PP PP P
Sbjct: 1064 -PPVPAP-SSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
Score = 31.1 bits (67), Expect = 0.24
Identities = 30/115 (26%), Positives = 32/115 (27%), Gaps = 8/115 (6%)
Frame = +3
Query: 570 PXXPRXPXXGAPRXXGRAXGXXXPRPXXXPGXGXPX--PPPXPXNPGXPPXPRGXXGXGG 743
P P+ P P P P P PP P G PP P+
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Query: 744 XPGP---PXXXPXGGAXTPXXGPGGGGPXXXXGA--XPPGGXXXXTPP-PXPXXG 890
P P P A P P G P A PP PP P P G
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVG 1206
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 35.1 bits (77), Expect = 0.015
Identities = 27/73 (36%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Frame = +3
Query: 702 GXPPXPRGXXGXGGXPGPPXXXPXGGAXTPXXGPGG--GGPXXXXGAXPPGGXXXXTPPP 875
G PP P G G GG G GG GPGG GGP G PGG
Sbjct: 199 GPPPGPGGFGGFGGFGG--EGHHHGGHGGFGGGPGGFEGGPGGFGGG--PGGFGGGLGGF 254
Query: 876 XPXXGXXXGGPXG 914
G GGP G
Sbjct: 255 GGGPGGFGGGPGG 267
Score = 34.3 bits (75), Expect = 0.026
Identities = 31/83 (37%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Frame = -3
Query: 880 GXGGGVFXXXP-PGGXAPFXXXGPPPPGPXXGVXAPPXGXXXGGPGXPPXPXSPRGXGGX 704
G GGG P PGG F G G G G GGPG P G GG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGE--GHHHG----GHGGFGGGPGG--FEGGPGGFGGG 243
Query: 703 PGXXGXG-GGXGXPXPGXXXGRG 638
PG G G GG G G G G
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPG 266
Score = 32.7 bits (71), Expect = 0.079
Identities = 25/74 (33%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Frame = -1
Query: 726 PPGGXGGXRGXXGXGGGXXPPGRXXXXGGGP--XXPXPAPPXGAPXXXGXGVXPXGXAGX 553
PP G GG G G GG G GGGP P G P G G+ G G
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL---GGFGG 256
Query: 552 X*XGXXPAPPXAGG 511
G P GG
Sbjct: 257 GPGGFGGGPGGHGG 270
Score = 29.9 bits (64), Expect = 0.55
Identities = 20/53 (37%), Positives = 20/53 (37%)
Frame = -1
Query: 792 GGSXPXPXGPXGGARXPXPXLXPPGGXGGXRGXXGXGGGXXPPGRXXXXGGGP 634
GG GP G P PGG GG G G GGG G GGP
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGG--GLGGFGGGPGGFGGGPGGHGGP 271
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.045
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +3
Query: 639 PRPXXXPGXGXPXPPPXP--XNPGXPPXPRGXXGXGGXPGPP 758
P P P P PPP P P PP P G G G P PP
Sbjct: 742 PTPAPAP---IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 31.5 bits (68), Expect = 0.18
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = -1
Query: 813 PPPRALXGGSXPXPXGP-XGGARXPXPXLXPPG-GXGGXR 700
PPP + GG P P P GA P P PP GG R
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Score = 30.7 bits (66), Expect = 0.32
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -3
Query: 811 PPPGPXXGVXAPPXGXXXGGPGXPPXPXSPRGXGGXP 701
P P P + PP GGP PP P G G P
Sbjct: 742 PTPAPAP-IPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 29.9 bits (64), Expect = 0.55
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Frame = -3
Query: 850 PPGGXAPFXXXGP---PPPGPXXG-VXAPPXGXXXGGPGXPPXPXSP 722
PP P P PPP P G PP G G PP P P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.5 bits (63), Expect = 0.73
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Frame = +1
Query: 835 PAP-PGXXXQXPPPPXRGXGXXXGGPXXXXXXXPPPPPPRGP 957
P P P PP P G P PPPPPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.73
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 677 PPPXPXXPRXPPXPPGGXRXGXGXRAPPXGP 769
PPP P PP PP G G PP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.1 bits (62), Expect = 0.97
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = +3
Query: 645 PXXXPGXGXPXPPPXPXNPGXPPXPRGXXGXGGXPGPPXXXPXGGAXTPXXGP 803
P P P P P P P PP P GG P PP GA P P
Sbjct: 733 PPPPPAVIVPTPAPAPI-PVPPPAPI----MGGPPPPPPPPGVAGAGPPPPPP 780
Score = 29.1 bits (62), Expect = 0.97
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 578 TPXPXXXGAPXGGAGXGXXGPPPXXXXRPGGXXPPPXPXXP 700
TP P P G PPP G PPP P P
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.3
Identities = 21/61 (34%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Frame = +2
Query: 557 PAXPXGXTPXPXXXGAPXGGAGXGXXGPPPXXXXRPG--GXXPPPXPXXPRXPPXPPGGX 730
P P P P P GPPP PG G PPP P P P GG
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP-PPPPGVAGAGPPPPPPPP--PAVSAGGS 790
Query: 731 R 733
R
Sbjct: 791 R 791
Score = 27.1 bits (57), Expect = 3.9
Identities = 25/78 (32%), Positives = 25/78 (32%)
Frame = +3
Query: 672 PXPPPXPXNPGXPPXPRGXXGXGGXPGPPXXXPXGGAXTPXXGPGGGGPXXXXGAXPPGG 851
P PPP P P P P PP GG P PG GA PP
Sbjct: 733 PPPPPAVIVPTPAPAP--------IPVPPPAPIMGGPPPPPPPPG------VAGAGPP-- 776
Query: 852 XXXXTPPPXPXXGXXXGG 905
PPP P GG
Sbjct: 777 -----PPPPPPPAVSAGG 789
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -1
Query: 684 GGGXXPPGRXXXXGGGPXXPXPAPP 610
GG PP G GP P P PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 29.5 bits (63), Expect = 0.73
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +3
Query: 639 PRPXXXPGXGXPXPPPXPXNPGXPPXPRGXXGXGGXPGPPXXXPXGGAXT 788
P P P G P P P P P G G PG P P G T
Sbjct: 1885 PPPMALPKAGPPSAAPTSALPPAGP-PAGATAISGNPGMPAPVPLTGKET 1933
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Frame = -3
Query: 847 PGGXAPFXXXGPPPPGPXXGVXAPPXG--XXXGGPGXPPXP 731
P AP P PP P V PP G P PP P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Frame = +3
Query: 639 PRPXXXPGXGXPXPPPXPXN----PGXPPXPRGXXGXGGXPGPPXXXP 770
P+ P P PPP P + P PP P G P P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 27.5 bits (58), Expect = 3.0
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +2
Query: 557 PAXPXGXTPXPXXXGAPXGGAGXGXXGPPPXXXXRPGGXXPPPXPXXPRXPPXPP 721
PA P P AP + PPP P PP P P P PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPT---PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +1
Query: 838 APPGXXXQXPPPPXRGXGXXXGGPXXXXXXXPPPPPP 948
APP PPPP P PPPP
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +2
Query: 626 GXXGPPPXXXXRPGGXXPPPXPXXPRXPPXPPGGXRXGXGXRAPP 760
G PPP +PG PPP PP G PP
Sbjct: 204 GEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 248
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +2
Query: 626 GXXGPPPXXXXRPGGXXPPPXPXXPRXPPXPPGGXRXGXGXRAPP 760
G PPP PG PPP PP G PP
Sbjct: 217 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 261
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +2
Query: 626 GXXGPPPXXXXRPGGXXPPPXPXXPRXPPXPPGGXRXGXGXRAPP 760
G PPP PG PPP PP G PP
Sbjct: 230 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 274
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +2
Query: 626 GXXGPPPXXXXRPGGXXPPPXPXXPRXPPXPPGGXRXGXGXRAPP 760
G PPP PG PPP PP G PP
Sbjct: 243 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 287
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +2
Query: 626 GXXGPPPXXXXRPGGXXPPPXPXXPRXPPXPPGGXRXGXGXRAPP 760
G PPP PG PPP PP G PP
Sbjct: 256 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 300
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +2
Query: 626 GXXGPPPXXXXRPGGXXPPPXPXXPRXPPXPPGGXRXGXGXRAPP 760
G PPP PG PPP PP G PP
Sbjct: 269 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 313
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +2
Query: 626 GXXGPPPXXXXRPGGXXPPPXPXXPRXPPXPPGGXRXGXGXRAPP 760
G PPP PG PPP PP G PP
Sbjct: 282 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 326
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +2
Query: 626 GXXGPPPXXXXRPGGXXPPPXPXXPRXPPXPPGGXRXGXGXRAPP 760
G PPP PG PPP PP G PP
Sbjct: 295 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 339
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.2 bits (55), Expect = 6.8
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Frame = -3
Query: 817 GPPP--PGPXXGVXAPPXGXXXGGPGXPPXPXSPRGXGGXPGXXGXGGGXGXPXPGXXXG 644
GPPP P + + P G G P +P G G G G P P G
Sbjct: 82 GPPPMDPSMRGSLLSGPGVARPAGRGIP-LGQAPVGLAGPV----RGVGYTAPPPPAGFG 136
Query: 643 RGXXXPXARP 614
RG P RP
Sbjct: 137 RGAPPPGFRP 146
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 6.8
Identities = 23/77 (29%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Frame = +3
Query: 657 PGXGXPXPPPXPXNPGXPPXPRGXXGXGGXPGPPXXXPXGGAXTPXXGPGGGGPXXXXGA 836
PG P PP PG P P G G P P PG P A
Sbjct: 487 PGTSAPLPPTTFAPPGVPLPP--IPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPA 544
Query: 837 XP--PGGXXXXTPPPXP 881
P PG PP P
Sbjct: 545 VPAMPGIPGATAPPGAP 561
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -3
Query: 847 PGGXAPFXXXGPPPPGPXXGVXAPPXGXXXGGPGXPPXP 731
PGG AP PPPPG +P G P P P
Sbjct: 283 PGG-APLVP--PPPPGMVMASPSPAAATIPGAPVMPNIP 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,590
Number of Sequences: 5004
Number of extensions: 43787
Number of successful extensions: 386
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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