Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_O09
         (957 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.027
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 30.3 bits (65), Expect = 0.027
 Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
 Frame = +3

Query: 657 PGXGXPXPPPXPXNP------GXPPXPRGXXGXGGXPG-PPXXXPXGGAXTPXXG 800
           P  G P P P P         G PP P      GG PG PP   P     +P  G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70



 Score = 27.1 bits (57), Expect = 0.25
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +2

Query: 659 RPGGXXPPPXPXXPRXPPXPPGGXRXGXGXRAPPXGPXG 775
           +P    P P P   + P  P  G         PP GP G
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 850 PPGGXAPFXXXGPPPPGPXXGVXAPP 773
           P  G  P    GPPP GP     APP
Sbjct: 34  PQRGSPPNPSQGPPPGGPP---GAPP 56



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = -3

Query: 805 PGPXXGVXAPPXGXXXGGPGXPPXPXSPRGXGGXP 701
           PGP       P     G P  P     P G  G P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/38 (28%), Positives = 11/38 (28%)
 Frame = +3

Query: 801 PGGGGPXXXXGAXPPGGXXXXTPPPXPXXGXXXGGPXG 914
           P  G P                 PP P  G   GGP G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 931  PPPPPPR 951
            PPPPPPR
Sbjct: 1859 PPPPPPR 1865


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = -2

Query: 347 RXGSXGXXXKGEPRPSRVVASEFWXYPPAPRXXFCXXPRXRDV*FWAP 204
           R  S     +G  R  R++ S +    PAP       PR   V  W P
Sbjct: 312 RERSRDRRGRGRSREHRIIPSHYIEQIPAPVYYGNFPPRPIMVRPWVP 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,027
Number of Sequences: 438
Number of extensions: 9676
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)