Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_O08
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    47   3e-06
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    37   0.004
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    36   0.006
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    36   0.010
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    35   0.018
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    33   0.071
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    32   0.094
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    32   0.094
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    32   0.12 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    31   0.22 
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    31   0.29 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    30   0.38 
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   1.2  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    29   1.2  
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    27   3.5  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   4.7  

>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = +2

Query: 164 QTQVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTF 343
           +T++FVG +P  +  ED+   F+ +G + +C +MN  GFV ++    A   +       F
Sbjct: 3   ETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEF 62

Query: 344 NGGVISVE 367
            G  I VE
Sbjct: 63  MGSRIVVE 70


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 31/127 (24%), Positives = 40/127 (31%), Gaps = 3/127 (2%)
 Frame = +2

Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 346
           VFVG L +    E+L+ LF+ FG +    I     CGFV     + A  AI  L      
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLG 364

Query: 347 GGVISVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRHAPPPRD-APYMRDRPGPVR 523
              I +                               P    PP    +PY    P P+ 
Sbjct: 365 NSRIRLSWGRNQNPIAAPALNYQSQVSQTTIPATSLFPAMSLPPQAQFSPYPAVAPSPLA 424

Query: 524 GYERGPP 544
              RG P
Sbjct: 425 LQTRGAP 431


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = +2

Query: 164 QTQVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN-------RCGFVHMQTEEQAAAAIR 322
           + +V+VG+L    +  +L++   + G V  C+I+N        C  +   T E+A  AI+
Sbjct: 65  ERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIK 124

Query: 323 ALHNSTFNGGVISV 364
            L N  F G ++ +
Sbjct: 125 TLSNQKFMGRLVYI 138



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
 Frame = +2

Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDI-------MNRCGFVHMQTEEQAAAAIRALH 331
           ++VG+LP  +   +L  LF   G V    I           G V  + E  AA++I  L+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341

Query: 332 NSTFNG 349
              + G
Sbjct: 342 GYRYGG 347


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
 Frame = +2

Query: 164 QTQVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN---------RCGFVHMQTEEQAAAA 316
           + +++VG L    +  DL   F RFG V+  +I+N         R  +++ +T+E     
Sbjct: 4   EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQK 63

Query: 317 IRA-LHNSTFNGGVISVE 367
            ++ L N+TF G  + +E
Sbjct: 64  CKSYLSNATFKGSKLRIE 81


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
 Frame = +2

Query: 164 QTQVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR-------------CGFVHMQTEEQ 304
           +  ++VG+LP   +  DL +LFE FG  ++  +++R               F+  + +  
Sbjct: 19  EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78

Query: 305 AAAAIRALHNSTFNGGVISVE 367
           A  AI +L+ S+F G  + VE
Sbjct: 79  ADNAIASLNGSSFQGNTLKVE 99


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 346
           VF+G+LP G   +++R+  E FG + +  I+      FVH       AAAI+A+     N
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFL---NIAAAIKAVQELPLN 264


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +2

Query: 167 TQVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 346
           T V+V  LP+    ++LR  F  FG +    + N  G +       A  AI  ++N   +
Sbjct: 176 TAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLH 235

Query: 347 G 349
           G
Sbjct: 236 G 236


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--CGFVHMQTEEQAAAAIRAL 328
           VF+G+LP     +++ + F +FG +    I+++    FVH      A   +R L
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTL 354


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
 Frame = +2

Query: 143 KSVXMVPQTQVFVGSLPQG-SKPEDLRKLFERFGVVTECDIMNR-----CG--FVHMQTE 298
           K++    + ++ + +LP    KP+ L   F +FG V E  I  +     CG  FV M+  
Sbjct: 99  KTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDR 158

Query: 299 EQAAAAIRALHNSTFNGGVISVE 367
           + A  A+ +L+ +  +G  I+V+
Sbjct: 159 KAAEEAMNSLNGTEIDGRPIAVD 181


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMN---RCGFVHMQTEEQAAAAIRALHNSTF 343
           +F+G + +  +   LR +FERFG V    I+N   R GF+ M   + A  A  A+ N  F
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSL-ILNHNYRHGFLKMFRRDAAEKAQVAMENVPF 466


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 170 QVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 265
           ++F+G L   +  + LR  FE+FG V +C +M
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 195



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 170 QVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 265
           ++FVG +P     E+ R  F +FG V +  +M
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 161 PQTQVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 265
           P+  +FV  L   ++ EDL  +F RFG +  C ++
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVI 276


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 167 TQVFVGSLPQGS-KPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTF 343
           +++F+G L   S    +L K+F+ +G + +  +    GFV   T E  A A+ A   +  
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422

Query: 344 NGGVISVE 367
            G  + +E
Sbjct: 423 RGQKLHLE 430


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 170 QVFVGSLPQGSKPEDLRKLFERFGVVTECDI 262
           +VFVG L   +K  ++R LFE  G V +  I
Sbjct: 45  RVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 493 IHEGPARSGARLRTRSAGGAL*RALCVRRGPAWVRADG 606
           I++ P +SG R+    AG  L   LC + G   +  DG
Sbjct: 163 IYQHPVQSGMRVLELGAGTGLVSILCAKMGSIVLATDG 200


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
 Frame = +2

Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRALH 331
           VF+ +L      + L   F  FG +  C +           GFVH  + E A AAI  ++
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229

Query: 332 NSTFN 346
               N
Sbjct: 230 GMLLN 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,763
Number of Sequences: 5004
Number of extensions: 44963
Number of successful extensions: 119
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)