Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_O07
         (933 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.       140   6e-35
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    28   0.47 

>Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.
          Length = 91

 Score =  140 bits (339), Expect = 6e-35
 Identities = 69/74 (93%), Positives = 69/74 (93%)
 Frame = +2

Query: 143 RHRKVLRDNIQGITKPAIRXLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHA 322
           RHRKVLRDNIQG TKPAIR LARRGGVKRISGLIYEE R VLKVFLENVIRDAV YTEHA
Sbjct: 18  RHRKVLRDNIQGTTKPAIRRLARRGGVKRISGLIYEERRGVLKVFLENVIRDAVAYTEHA 77

Query: 323 KRKTVTAMDVVYAL 364
           KRKTVTAMDVVYAL
Sbjct: 78  KRKTVTAMDVVYAL 91


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 0.47
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 142 TAPESSQR*YSRNNEACHSKXGATRRRQTYIRPDLRGNTQRSKGFS 279
           T   ++ R YSR NE C S  G   +R++ ++P  +G   +S  FS
Sbjct: 224 TPTSTTMRDYSRKNENCSSSGG---QRES-LKPKPKGKVAKSSEFS 265


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 370,134
Number of Sequences: 2352
Number of extensions: 5046
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 101708946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)